CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002280.1-P	Field mustard	plastid	99.29	97.89
CDY35827	Canola	plastid	97.14	93.47
CDY60380	Canola	plastid	78.93	82.46
CDX88849	Canola	plastid	78.21	81.41
AT5G20190.1	Thale cress	plastid	84.29	81.38
CDY45101	Canola	plastid	81.07	80.21
GSMUA_Achr2P15930_001	Banana	cytosol	24.29	56.67
KRH20249	Soybean	plastid	45.71	49.81
KRH03683	Soybean	plastid	45.0	48.28
VIT_11s0016g05430.t01	Wine grape	plastid	46.07	44.79
VIT_09s0002g06810.t01	Wine grape	cytosol	46.43	42.48
CDY39992	Canola	nucleus	42.5	38.89
CDX87295	Canola	nucleus	35.0	38.74
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	31.79	38.7
HORVU7Hr1G090280.1	Barley	mitochondrion	39.29	38.19
TraesCS7A01G377700.1	Wheat	mitochondrion	38.93	37.98
PGSC0003DMT400079441	Potato	plastid	31.43	37.93
TraesCS7D01G374500.1	Wheat	mitochondrion	38.21	37.81
Os06t0606700-00	Rice	plastid	37.5	37.77
TraesCS7B01G279400.1	Wheat	mitochondrion	38.93	37.2
CDX75237	Canola	plastid	32.86	37.1
CDY37568	Canola	nucleus	41.43	36.94
CDX68837	Canola	mitochondrion, plastid	32.86	36.8
Zm00001d046530_P001	Maize	plastid	38.21	36.03
CDY41120	Canola	mitochondrion	38.93	35.5
CDX78813	Canola	mitochondrion	28.21	34.5
EER88623	Sorghum	mitochondrion	38.57	33.75
CDY44501	Canola	mitochondrion	26.79	30.86
CDY08881	Canola	plastid	28.21	30.38
CDX76550	Canola	plastid	27.86	29.66
CDY02002	Canola	cytosol, mitochondrion, nucleus	14.64	26.97
Os04t0496700-00	Rice	nucleus	18.93	25.73
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	18.93	21.54
CDY18241	Canola	nucleus	21.43	20.69
CDX89816	Canola	nucleus	21.07	20.27
CDY59180	Canola	cytosol	11.79	18.64
CDY51354	Canola	plastid	23.57	13.69
CDX97868	Canola	plastid	23.93	13.35
CDX99068	Canola	plastid	20.0	12.23
CDY09927	Canola	plastid	21.43	12.12
CDY06247	Canola	plastid	21.43	12.12
CDX86126	Canola	plastid	20.71	11.93
CDY10264	Canola	plastid	21.79	11.8
CDY06694	Canola	plastid	21.43	11.67
CDY38075	Canola	plastid	16.43	10.85
CDY58299	Canola	plastid	18.21	10.52

Protein Annotations

EnsemblPlants:CDX92483	EnsemblPlantsGene:GSBRNA2T00154258001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75
PFscan:PS50293	ProteinID:CDX92483	ProteinID:CDX92483.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EEA3C0
MapMan:35.2	:	:	:	:	:

Description

BnaA10g15220D

Coordinates

chrLK031872:-:891246..892446

Molecular Weight (calculated)

30590.5 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.522

Length

280 amino acids

Sequence
(BLAST)

001: MLLRSASTPL LNSLVHASSP RESPIEAVES VHQIQRPRSL MLSSSSPCCY SSMSVHSSDE SARRMKRTAS ESDLRHLTKP ASKFLSGGGA LMEDVEEGIG
101: FGLIRTSSYD GLSWGLEEDE TEVSGGCGGG GGVIRGGGKG DGSDGDDGTD VHYRKMIEAN PGNGIFLSNY AKFLKEVRKD YVRAEEYCGR AILTNPNDGN
201: VLAMYAELVW TIHKDSSRAE SYFNRAVAAA PDDCYVQASY ARFLWDADEE EEEERHEEEL EPQTCRMSFF TGPSPITAMS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.