Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88849 | Canola | plastid | 92.91 | 92.57 |
| AT5G20190.1 | Thale cress | plastid | 85.82 | 79.31 |
| CDX92483 | Canola | plastid | 82.46 | 78.93 |
| CDY35827 | Canola | plastid | 84.33 | 77.66 |
| CDY45101 | Canola | plastid | 78.73 | 74.56 |
| GSMUA_Achr2P15930_001 | Banana | cytosol | 25.37 | 56.67 |
| KRH20249 | Soybean | plastid | 48.13 | 50.19 |
| KRH03683 | Soybean | plastid | 47.01 | 48.28 |
| VIT_11s0016g05430.t01 | Wine grape | plastid | 45.9 | 42.71 |
| VIT_09s0002g06810.t01 | Wine grape | cytosol | 46.27 | 40.52 |
| TraesCS7A01G377700.1 | Wheat | mitochondrion | 39.18 | 36.59 |
| HORVU7Hr1G090280.1 | Barley | mitochondrion | 39.18 | 36.46 |
| TraesCS7D01G374500.1 | Wheat | mitochondrion | 38.43 | 36.4 |
| Os06t0606700-00 | Rice | plastid | 37.69 | 36.33 |
| CDX75237 | Canola | plastid | 33.58 | 36.29 |
| PGSC0003DMT400079441 | Potato | plastid | 31.34 | 36.21 |
| Solyc07g008210.2.1 | Tomato | cytosol, nucleus, plastid | 30.97 | 36.09 |
| CDY39992 | Canola | nucleus | 41.04 | 35.95 |
| CDX68837 | Canola | mitochondrion, plastid | 33.21 | 35.6 |
| TraesCS7B01G279400.1 | Wheat | mitochondrion | 38.81 | 35.49 |
| CDX87295 | Canola | nucleus | 33.21 | 35.18 |
| Zm00001d046530_P001 | Maize | plastid | 38.43 | 34.68 |
| CDX78813 | Canola | mitochondrion | 29.1 | 34.06 |
| CDY37568 | Canola | nucleus | 38.81 | 33.12 |
| CDY41120 | Canola | mitochondrion | 37.69 | 32.9 |
| EER88623 | Sorghum | mitochondrion | 38.06 | 31.88 |
| CDY44501 | Canola | mitochondrion | 28.73 | 31.69 |
| CDY08881 | Canola | plastid | 29.85 | 30.77 |
| CDX76550 | Canola | plastid | 29.48 | 30.04 |
| CDY02002 | Canola | cytosol, mitochondrion, nucleus | 15.67 | 27.63 |
| Os04t0496700-00 | Rice | nucleus | 17.16 | 22.33 |
| CDY18241 | Canola | nucleus | 23.51 | 21.72 |
| CDX89816 | Canola | nucleus | 23.13 | 21.31 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 19.03 | 20.73 |
| CDY59180 | Canola | cytosol | 13.43 | 20.34 |
| CDY51354 | Canola | plastid | 25.75 | 14.32 |
| CDX97868 | Canola | plastid | 26.12 | 13.94 |
| CDY06247 | Canola | plastid | 21.64 | 11.72 |
| CDY09927 | Canola | plastid | 21.64 | 11.72 |
| CDY10264 | Canola | plastid | 22.39 | 11.61 |
| CDY06694 | Canola | plastid | 22.01 | 11.48 |
| CDX99068 | Canola | plastid | 19.4 | 11.35 |
| CDX86126 | Canola | plastid | 19.4 | 10.7 |
| CDY38075 | Canola | plastid | 15.3 | 9.67 |
| CDY58299 | Canola | plastid | 17.16 | 9.48 |
Protein Annotations
| EnsemblPlants:CDY60380 | EnsemblPlantsGene:GSBRNA2T00028545001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF75 | ProteinID:CDY60380 | ProteinID:CDY60380.1 |
| SEG:seg | SUPFAM:SSF48452 | UniParc:UPI0004EF2377 | UniProt:A0A078J3B2 | MapMan:35.2 | : |
Description
BnaCnng36200DBnaCnng36200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3B2]
Coordinates
chrLK033874:-:40653..42212
Molecular Weight (calculated)
29544.2 Da
IEP (calculated)
4.671
GRAVY (calculated)
-0.527
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSASTPL LTSLVHVSSP RESPIEPESL HQIQRPRSIT LSSSSSCCYS PVSIHSSDES TRRIKRTASE SDLKHLTSTK HASKFLTGAL MEDIEEGIGF
101: GLIPASSYET EVGGGGGGKS RSGGRSDGGD DGEDSTDVHY RKMIEANPGN GIFLSNYAKF LKEVRGDYLK AEEYCGRAVL VSPYDGNVLA MYAELVWMIH
201: KDSSRAESYF NRAVAAAPDD CYVQASYARF LWDAEEEEDE EERHEEVLEP QTSRMDFFTG PYPITAMS
101: GLIPASSYET EVGGGGGGKS RSGGRSDGGD DGEDSTDVHY RKMIEANPGN GIFLSNYAKF LKEVRGDYLK AEEYCGRAVL VSPYDGNVLA MYAELVWMIH
201: KDSSRAESYF NRAVAAAPDD CYVQASYARF LWDAEEEEDE EERHEEVLEP QTSRMDFFTG PYPITAMS
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.