CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58299	Canola	plastid	90.8	79.38
CDX99068	Canola	plastid	68.63	63.54
CDX86126	Canola	plastid	70.28	61.32
AT3G47080.1	Thale cress	plastid	68.63	56.5
CDY02002	Canola	cytosol, mitochondrion, nucleus	15.57	43.42
CDX97868	Canola	plastid	46.7	39.44
CDY51354	Canola	plastid	44.58	39.21
VIT_06s0004g06290.t01	Wine grape	plastid	46.46	37.24
KRH46437	Soybean	plastid	45.52	36.76
KRG98335	Soybean	plastid	45.99	36.65
CDY10264	Canola	plastid	43.87	35.98
CDY06694	Canola	plastid	43.4	35.8
Solyc06g076850.2.1	Tomato	plastid	46.46	35.75
PGSC0003DMT400078227	Potato	plastid	45.75	35.08
CDY06247	Canola	plastid	40.57	34.75
CDY09927	Canola	plastid	40.09	34.34
TraesCS3B01G400100.1	Wheat	plastid	33.96	30.06
TraesCS3D01G361500.1	Wheat	plastid	33.96	30.0
TraesCS3A01G368600.1	Wheat	plastid	33.96	29.94
HORVU3Hr1G084970.2	Barley	plastid	33.96	29.81
GSMUA_Achr8P02280_001	Banana	plastid	35.14	29.8
GSMUA_Achr9P03650_001	Banana	plastid	35.61	29.78
GSMUA_Achr11P...	Banana	plastid	34.67	29.46
Os05t0447700-01	Rice	plastid	33.49	29.34
Os01t0855200-01	Rice	plastid	34.67	28.71
TraesCS1A01G278600.1	Wheat	plastid	31.37	28.3
Zm00001d012325_P001	Maize	plastid	34.43	28.29
TraesCS1D01G277900.1	Wheat	plastid	31.6	28.27
Zm00001d042812_P001	Maize	plastid	34.67	28.11
TraesCS1B01G287500.1	Wheat	plastid	31.6	27.97
GSMUA_Achr6P33690_001	Banana	plastid	34.91	27.72
EES01775	Sorghum	plastid	33.96	27.17
HORVU1Hr1G073460.2	Barley	plastid	32.31	26.76
KXG22120	Sorghum	plastid	32.08	26.67
Zm00001d038274_P002	Maize	plastid	31.13	26.29
Zm00001d010075_P001	Maize	plastid	32.31	26.1
GSMUA_Achr5P28840_001	Banana	cytosol	30.19	22.82
CDY44501	Canola	mitochondrion	9.91	17.28
CDY45101	Canola	plastid	11.32	16.96
CDX75237	Canola	plastid	9.91	16.94
CDX76550	Canola	plastid	10.38	16.73
CDY08881	Canola	plastid	10.14	16.54
CDX92483	Canola	plastid	10.85	16.43
CDX68837	Canola	mitochondrion, plastid	9.67	16.4
CDY35827	Canola	plastid	11.08	16.15
CDX78813	Canola	mitochondrion	8.49	15.72
CDY60380	Canola	plastid	9.67	15.3
CDX88849	Canola	plastid	9.43	14.87
CDY59180	Canola	cytosol	5.9	14.12
CDY41120	Canola	mitochondrion	9.67	13.36
CDY18241	Canola	nucleus	8.96	13.1
CDY39992	Canola	nucleus	9.43	13.07
CDY37568	Canola	nucleus	9.43	12.74
CDX89816	Canola	nucleus	8.73	12.71
CDX87295	Canola	nucleus	7.31	12.25

Protein Annotations

EnsemblPlants:CDY38075	EnsemblPlantsGene:GSBRNA2T00065340001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF87	ProteinID:CDY38075	ProteinID:CDY38075.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EED424	UniProt:A0A078HI19	MapMan:35.2	:

Description

BnaC03g75140DBnaC03g75140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI19]

Coordinates

chrLK032415:-:303888..307286

Molecular Weight (calculated)

48186.8 Da

IEP (calculated)

5.487

GRAVY (calculated)

-0.435

Length

424 amino acids

Sequence
(BLAST)

001: MEVKVATTTS FHWSGRHAAM PKCPSFSQTI NSSKRRRYCT RDVYTSVVGG GGGSLSCQTR LNPSTFLGTE SGKLHRSKSC ELLKFTKNRT GMQKHYPLRR
101: VCSASSSFFS DQDFSAKMQE LALQFKIAGE EEDLERNKYQ SERIHDKVKL LQEMIKRKLQ EQALKEASES NNCSIYKAFS SMVFMIDELR SFVLQTRETI
201: FYEEDLQSVV KKDMHASLLW IFQSVFSQTP TLMVYVMILL ANFTVHSVAS NLAVPASPVT EGQDQTHQRF ESTLLSHVVS GNFDKISGLS TQGIREDGLS
301: LWNSMVEEAD QMQDSPVVRD IRLSERIELD DHARTESVYE ISLVQEPNNP LLLANYAQFL YLISQDYDRS EICFKKAIES EENFLEAISA DPTNSYYAAN
401: YANFLWQTGG EETCYPLESS DSPQ

Best Arabidopsis Sequence Match ( AT3G47080.1 )
(BLAST)

001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.