CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019495.1-P	Field mustard	plastid	91.34	95.68
CDY38075	Canola	plastid	79.38	90.8
CDX99068	Canola	plastid	69.07	73.14
CDX86126	Canola	plastid	70.72	70.58
AT3G47080.1	Thale cress	plastid	69.48	65.44
CDY02002	Canola	cytosol, mitochondrion, nucleus	16.91	53.95
CDY51354	Canola	plastid	44.74	45.02
CDX97868	Canola	plastid	46.39	44.82
VIT_06s0004g06290.t01	Wine grape	plastid	46.6	42.72
CDY06694	Canola	plastid	45.15	42.61
CDY10264	Canola	plastid	45.36	42.55
KRH46437	Soybean	plastid	45.36	41.9
Solyc06g076850.2.1	Tomato	plastid	47.42	41.74
KRG98335	Soybean	plastid	45.77	41.73
PGSC0003DMT400078227	Potato	plastid	46.8	41.05
CDY06247	Canola	plastid	41.65	40.81
CDY09927	Canola	plastid	41.24	40.4
TraesCS3B01G400100.1	Wheat	plastid	34.64	35.07
TraesCS3D01G361500.1	Wheat	plastid	34.64	35.0
TraesCS3A01G368600.1	Wheat	plastid	34.64	34.93
HORVU3Hr1G084970.2	Barley	plastid	34.43	34.58
GSMUA_Achr8P02280_001	Banana	plastid	35.46	34.4
GSMUA_Achr9P03650_001	Banana	plastid	35.46	33.92
Os01t0855200-01	Rice	plastid	35.67	33.79
Os05t0447700-01	Rice	plastid	33.4	33.47
GSMUA_Achr11P...	Banana	plastid	33.81	32.87
TraesCS1B01G287500.1	Wheat	plastid	32.37	32.78
Zm00001d012325_P001	Maize	plastid	34.64	32.56
TraesCS1A01G278600.1	Wheat	plastid	31.55	32.55
TraesCS1D01G277900.1	Wheat	plastid	31.75	32.49
GSMUA_Achr6P33690_001	Banana	plastid	35.67	32.4
Zm00001d042812_P001	Maize	plastid	34.43	31.93
EES01775	Sorghum	plastid	34.43	31.51
HORVU1Hr1G073460.2	Barley	plastid	32.16	30.47
KXG22120	Sorghum	plastid	31.55	30.0
Zm00001d038274_P002	Maize	plastid	30.72	29.68
Zm00001d010075_P001	Maize	plastid	31.96	29.52
GSMUA_Achr5P28840_001	Banana	cytosol	31.96	27.63
CDY44501	Canola	mitochondrion	10.31	20.58
CDX75237	Canola	plastid	10.31	20.16
CDX76550	Canola	plastid	10.72	19.77
CDY08881	Canola	plastid	10.52	19.62
CDX78813	Canola	mitochondrion	9.07	19.21
CDX68837	Canola	mitochondrion, plastid	9.9	19.2
CDY45101	Canola	plastid	10.93	18.73
CDX92483	Canola	plastid	10.52	18.21
CDY35827	Canola	plastid	10.72	17.87
CDY60380	Canola	plastid	9.48	17.16
CDY59180	Canola	cytosol	6.19	16.95
CDX88849	Canola	plastid	9.28	16.73
CDY18241	Canola	nucleus	8.87	14.83
CDX89816	Canola	nucleus	8.87	14.78
CDX87295	Canola	nucleus	7.42	14.23
CDY39992	Canola	nucleus	8.66	13.73
CDY41120	Canola	mitochondrion	8.66	13.68
CDY37568	Canola	nucleus	8.66	13.38

Protein Annotations

EnsemblPlants:CDY58299	EnsemblPlantsGene:GSBRNA2T00023365001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
PFscan:PS50293	ProteinID:CDY58299	ProteinID:CDY58299.1	SEG:seg	SUPFAM:SSF81901	UniParc:UPI0004EEFA27
UniProt:A0A078J5N5	MapMan:35.2	:	:	:	:

Description

BnaA06g38730DBnaA06g38730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5N5]

Coordinates

chrLK033654:+:31628..33281

Molecular Weight (calculated)

55202.0 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.426

Length

485 amino acids

Sequence
(BLAST)

001: MEVNVATTTT FHWSGRHAAM PKCQSFSQTV NSSKRRRYCR RDVYTSVVGG GGGGGGSLSC QTRLNPSTFL GTESGKVHRS KSCELLKFTK NRTGMQKHYP
101: LRRVCSASFS FFSDQDFSAK MQELALQFKI AGEEEDLERN KHQSERILDK VKLLQESVPG LASLEAPGIE MVNHSSIEQK ANSVDLPLSL RMIKRKLQEQ
201: ALKEASESNI SSIYKAFSSM VFMIDELHSF ALQTKESIFY EEDLQGVVKK DMHASYLWIF QSVFSQTPTL MVYVMILLAN FTVHSVASNL AIPASPVTKG
301: QDQTHQRFES TLLDHVVSGH FDKISRLQEI REDELILWNS IVEEADQMQD SPVVRDMRLN ERTELDDYAR TESLYEISLV QEPNNPLLLA NYAQFLYLIS
401: QDYDRADKCF KKAIESEEVD AETYSKYAVF QWKVLNDLWA AEENFLEAIS ADPTNSFYAS NYANFLWQTG GEETCYPLES SDYPQ

Best Arabidopsis Sequence Match ( AT3G47080.1 )
(BLAST)

001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.