Factsheet for Os01t0855200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G361500.1	Wheat	plastid	76.95	82.08
TraesCS3B01G400100.1	Wheat	plastid	76.76	82.05
TraesCS3A01G368600.1	Wheat	plastid	76.37	81.29
HORVU3Hr1G084970.2	Barley	plastid	75.78	80.33
Zm00001d042812_P001	Maize	plastid	79.1	77.44
Zm00001d012325_P001	Maize	plastid	77.34	76.74
EES01775	Sorghum	plastid	79.1	76.42
Os05t0447700-01	Rice	plastid	66.8	70.66
Os08t0382600-00	Rice	mitochondrion	18.95	55.43
CDY02002	Canola	cytosol, mitochondrion, nucleus	15.43	51.97
GSMUA_Achr8P02280_001	Banana	plastid	48.83	50.0
GSMUA_Achr9P03650_001	Banana	plastid	49.22	49.7
GSMUA_Achr6P33690_001	Banana	plastid	50.2	48.13
GSMUA_Achr11P...	Banana	plastid	45.9	47.09
Bra018368.1-P	Field mustard	plastid	41.21	45.18
VIT_06s0004g06290.t01	Wine grape	plastid	46.48	44.99
KRG98335	Soybean	plastid	45.9	44.17
CDY51354	Canola	plastid	41.02	43.57
PGSC0003DMT400078227	Potato	plastid	46.88	43.4
Bra015570.1-P	Field mustard	plastid	43.55	43.39
Solyc06g076850.2.1	Tomato	plastid	46.68	43.38
AT2G29670.2	Thale cress	plastid	45.31	43.28
CDX97868	Canola	plastid	42.38	43.23
Bra039995.1-P	Field mustard	plastid	41.02	43.21
CDY06694	Canola	plastid	43.36	43.19
CDY10264	Canola	plastid	43.36	42.94
KRH46437	Soybean	plastid	43.95	42.86
CDY06247	Canola	plastid	41.41	42.83
Bra031567.1-P	Field mustard	plastid	41.41	42.83
CDY09927	Canola	plastid	40.43	41.82
GSMUA_Achr5P28840_001	Banana	cytosol	44.73	40.82
AT1G07280.1	Thale cress	plastid	43.16	40.04
Bra019495.1-P	Field mustard	plastid	33.2	36.72
CDX99068	Canola	plastid	32.23	36.03
Bra018168.1-P	Field mustard	plastid	32.23	36.03
CDY58299	Canola	plastid	33.79	35.67
CDX86126	Canola	plastid	33.4	35.19
CDY38075	Canola	plastid	28.71	34.67
AT3G47080.1	Thale cress	plastid	34.77	34.56
Os10t0501900-01	Rice	plastid	19.14	27.0
Os06t0606700-00	Rice	plastid	12.89	23.74
Os04t0510600-01	Rice	plastid	12.7	23.47
Os10t0576600-01	Rice	plastid	10.16	22.91
Os04t0496700-00	Rice	nucleus	8.4	20.87
Os03t0140700-01	Rice	plastid	13.48	20.35
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	8.01	16.67

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:4324827	ProteinID:BAD82471.1	ProteinID:BAF06754.1	ProteinID:BAS75284.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0009987	GO:GO:0098869	InterPro:IPR011990	InterPro:IPR013026	EnsemblPlantsGene:Os01g0855200
EnsemblPlants:Os01t0855200-01	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	UniProt:Q5N7T3
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000049EA68	RefSeq:XP_015622042.1	SEG:seg

Description

Tetratricopeptide-like helical domain containing protein. (Os01t0855200-01)

Coordinates

chr1:+:36894607..36897206

Molecular Weight (calculated)

54990.3 Da

IEP (calculated)

5.590

GRAVY (calculated)

-0.302

Length

512 amino acids

Sequence
(BLAST)

001: MGIQVAAVTS SPCAVTTSSS SSLSPSSSAA ATTSRRHGVL GGVRLSRGQS SLASWSVGMT RRRAGGHQMA RRALSASIDS IGSDGGDDEE FLRRIQELAV
101: GLHPGAAGCG WPASVERSAS SVGLPLSLRM LKRKKQQQQQ QGRWDERLID CAGESARGAV GRAFSSMVLI IRELQSFTLQ MRQALFYEDL QRVLARVHAE
201: MHASFVWLFQ HIFSGTPALM VSVMLLLANF TVYSMGDSVA AAATLPPPQP PAATVAMVDT QHAEQSHSHQ RFDHASLKTL SIGRTASVGG NSGGGGKVRP
301: VAGATGDGRS DEWSNRQSGA VLPQDASQGT PGAGAEEAVP VSEAMAVEET EDELVIWKRI ADEATRMQAS VRAEALMDPD TLGQLVAPVE AKLDTEDTAE
401: FAATEERYER AVSEEPDNSL LLSNFAQFLY TVQRDHDRAE HYFKRAVRAE PADAEAMGRY ATFLWKARND LAAAEETYQE AIAAEPSNSH HAAAYAHFLW
501: NTGGDDTCYP LD

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.