CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018368.1-P	Field mustard	plastid	94.08	30.62
CDY51354	Canola	plastid	88.16	27.8
CDX97868	Canola	plastid	88.82	26.89
AT2G29670.2	Thale cress	plastid	82.89	23.51
CDY09927	Canola	plastid	69.74	21.41
CDY06247	Canola	plastid	69.74	21.41
CDX99068	Canola	plastid	62.5	20.74
CDY06694	Canola	plastid	69.74	20.62
CDY10264	Canola	plastid	69.74	20.5
CDX86126	Canola	plastid	63.16	19.75
VIT_06s0004g06290.t01	Wine grape	plastid	66.45	19.09
KRG98335	Soybean	plastid	66.45	18.98
KRH46437	Soybean	plastid	63.82	18.48
TraesCS1A01G278600.1	Wheat	plastid	53.95	17.45
GSMUA_Achr8P02280_001	Banana	plastid	57.24	17.4
TraesCS1D01G277900.1	Wheat	plastid	53.29	17.09
Solyc06g076850.2.1	Tomato	plastid	61.84	17.06
GSMUA_Achr11P...	Banana	plastid	55.92	17.03
CDX78813	Canola	mitochondrion	25.66	17.03
TraesCS1B01G287500.1	Wheat	plastid	53.29	16.91
CDY58299	Canola	plastid	53.95	16.91
PGSC0003DMT400078227	Potato	plastid	61.18	16.82
Os05t0447700-01	Rice	plastid	53.29	16.74
HORVU3Hr1G084970.2	Barley	plastid	52.63	16.56
TraesCS3B01G400100.1	Wheat	plastid	51.97	16.49
GSMUA_Achr6P33690_001	Banana	plastid	57.89	16.48
CDY44501	Canola	mitochondrion	26.32	16.46
TraesCS3D01G361500.1	Wheat	plastid	51.97	16.46
GSMUA_Achr9P03650_001	Banana	plastid	54.61	16.37
TraesCS3A01G368600.1	Wheat	plastid	50.66	16.01
CDX76550	Canola	plastid	27.63	15.97
CDY08881	Canola	plastid	26.97	15.77
CDX75237	Canola	plastid	25.66	15.73
CDY60380	Canola	plastid	27.63	15.67
HORVU1Hr1G073460.2	Barley	plastid	52.63	15.62
CDX88849	Canola	plastid	27.63	15.61
CDX68837	Canola	mitochondrion, plastid	25.66	15.6
CDY38075	Canola	plastid	43.42	15.57
Os01t0855200-01	Rice	plastid	51.97	15.43
GSMUA_Achr5P28840_001	Banana	cytosol	55.26	14.97
Zm00001d012325_P001	Maize	plastid	50.66	14.92
CDY45101	Canola	plastid	27.63	14.84
CDY59180	Canola	cytosol	17.11	14.69
CDX92483	Canola	plastid	26.97	14.64
Zm00001d038274_P002	Maize	plastid	46.71	14.14
CDY35827	Canola	plastid	26.97	14.09
EES01775	Sorghum	plastid	48.68	13.96
Zm00001d042812_P001	Maize	plastid	48.03	13.96
KXG22120	Sorghum	plastid	45.39	13.53
Zm00001d010075_P001	Maize	plastid	46.71	13.52
CDY18241	Canola	nucleus	25.66	13.45
CDX89816	Canola	nucleus	25.66	13.4
CDX87295	Canola	nucleus	19.74	11.86
CDY41120	Canola	mitochondrion	23.68	11.73
CDY37568	Canola	nucleus	23.68	11.46
CDY39992	Canola	nucleus	22.37	11.11

Protein Annotations

EnsemblPlants:CDY02002	EnsemblPlantsGene:GSBRNA2T00113323001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
PFscan:PS50293	ProteinID:CDY02002	ProteinID:CDY02002.1	SUPFAM:SSF48452	UniParc:UPI0004EEE658	MapMan:35.2

Description

BnaC04g14990D

Coordinates

chrLK031931:-:222302..227205

Molecular Weight (calculated)

17752.3 Da

IEP (calculated)

4.040

GRAVY (calculated)

-0.633

Length

152 amino acids

Sequence
(BLAST)

001: MQYSKIDNVL DHETRKRFVS PLDARVESEK DIDYFRTELL YQTGLSQEPD NPLLLANYAQ FLYIVSYDYD RAEEYFKRAV GVEPKDAEAL SKYATFLWRA
101: RDDLWAAEEN FLEAIDADPT NSFYAANYAN FLWNTGGDET CFPLDESHED NI

Best Arabidopsis Sequence Match ( AT1G07280.1 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.