CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78813	Canola	mitochondrion	84.77	89.96
CDX76550	Canola	plastid	79.42	73.38
CDY08881	Canola	plastid	77.37	72.31
AT4G17940.1	Thale cress	mitochondrion	79.42	70.44
VIT_02s0012g01590.t01	Wine grape	nucleus	45.27	51.16
Solyc08g076730.2.1	Tomato	plastid	53.5	43.05
PGSC0003DMT400045174	Potato	plastid	53.5	43.05
KRH39558	Soybean	plastid	44.03	42.29
GSMUA_Achr5P03500_001	Banana	plastid	42.39	41.37
GSMUA_Achr4P27320_001	Banana	plastid	44.44	40.75
TraesCS1A01G194200.1	Wheat	plastid	37.45	38.56
TraesCS1B01G209200.1	Wheat	plastid	36.63	37.55
KRH74400	Soybean	nucleus, plastid	44.86	37.46
Os10t0576600-01	Rice	plastid	34.16	36.56
Zm00001d030086_P001	Maize	plastid	34.57	33.73
EER91874	Sorghum	plastid	33.74	31.78
CDX68837	Canola	mitochondrion, plastid	30.04	29.2
CDX75237	Canola	plastid	29.63	29.03
CDY60380	Canola	plastid	31.69	28.73
CDX88849	Canola	plastid	31.69	28.62
CDY45101	Canola	plastid	32.1	27.56
CDX92483	Canola	plastid	30.86	26.79
CDY02002	Canola	cytosol, mitochondrion, nucleus	16.46	26.32
CDY35827	Canola	plastid	30.86	25.77
CDX87295	Canola	nucleus	25.1	24.11
CDY39992	Canola	nucleus	29.22	23.2
CDY18241	Canola	nucleus	27.16	22.76
CDX89816	Canola	nucleus	27.16	22.68
CDY59180	Canola	cytosol	16.46	22.6
CDY41120	Canola	mitochondrion	28.4	22.48
CDY37568	Canola	nucleus	27.57	21.34
HORVU1Hr1G050780.2	Barley	plastid	30.04	19.16
CDX97868	Canola	plastid	25.93	12.55
CDY51354	Canola	plastid	24.69	12.45
CDY06247	Canola	plastid	22.63	11.11
CDY09927	Canola	plastid	21.81	10.71
CDY06694	Canola	plastid	22.63	10.7
CDX99068	Canola	plastid	20.16	10.7
CDX86126	Canola	plastid	20.99	10.49
CDY10264	Canola	plastid	22.22	10.44
CDY58299	Canola	plastid	20.58	10.31
CDY38075	Canola	plastid	17.28	9.91

Protein Annotations

EnsemblPlants:CDY44501	EnsemblPlantsGene:GSBRNA2T00080259001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF53
PFscan:PS50293	ProteinID:CDY44501	ProteinID:CDY44501.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EE6755
UniProt:A0A078I3T5	MapMan:35.2	:	:	:	:

Description

BnaC01g10480DBnaC01g10480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3T5]

Coordinates

chrLK032592:-:99237..100379

Molecular Weight (calculated)

26747.2 Da

IEP (calculated)

4.351

GRAVY (calculated)

-0.595

Length

243 amino acids

Sequence
(BLAST)

001: MKSLLMRTGS MPVQTRFIPS TIARHNSVES LSTYGERFPV GKISIDAKSA AGMRRVLSES DVIRSERMSK SVVGSKPSPA RIPEEEEQGF SVGGGGSGFS
101: GGDGSRGGGG GYEDRSRIGD YYREMLKSNP NSSLLLMNYG KFLYEVERDL ERAEEYYGRA ILADPGDGEA LSMYGKLIWE TKRDEKRAQC YFDQAVNASP
201: DDCMVLGSYA HFMWEAEDDD DDDDEEEEDL MVGASPAMMV SAV

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.