Factsheet for Solyc08g076730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045174	Potato	plastid	91.72	91.72
Bra013269.1-P	Field mustard	mitochondrion	42.72	56.33
CDX78813	Canola	mitochondrion	42.38	55.9
CDY44501	Canola	mitochondrion	43.05	53.5
VIT_02s0012g01590.t01	Wine grape	nucleus	36.42	51.16
CDY08881	Canola	plastid	42.72	49.62
KRH39558	Soybean	plastid	41.39	49.41
Bra021028.1-P	Field mustard	plastid	42.72	49.05
CDX76550	Canola	plastid	42.38	48.67
AT4G17940.1	Thale cress	mitochondrion	44.04	48.54
GSMUA_Achr4P27320_001	Banana	plastid	40.07	45.66
KRH74400	Soybean	nucleus, plastid	43.71	45.36
GSMUA_Achr5P03500_001	Banana	plastid	35.43	42.97
Os10t0576600-01	Rice	plastid	30.79	40.97
TraesCS1A01G194200.1	Wheat	plastid	31.46	40.25
TraesCS1B01G209200.1	Wheat	plastid	31.46	40.08
Zm00001d030086_P001	Maize	plastid	31.13	37.75
EER91874	Sorghum	plastid	30.13	35.27
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	24.5	32.17
Solyc06g068130.2.1	Tomato	plastid	23.84	30.0
Solyc03g116670.2.1	Tomato	nucleus	27.15	26.03
Solyc09g064630.2.1	Tomato	plastid	26.16	22.13
HORVU1Hr1G050780.2	Barley	plastid	27.48	21.78
Solyc09g090930.2.1	Tomato	nucleus	19.54	14.82
Solyc05g052700.2.1	Tomato	extracellular	18.21	12.2
Solyc03g005710.1.1	Tomato	cytosol	14.24	11.38
Solyc06g076850.2.1	Tomato	plastid	19.87	10.89

Protein Annotations

EnsemblPlants:Solyc08g076730.2.1	EnsemblPlantsGene:Solyc08g076730.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF53
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000276C0A8	UniProt:K4CN34	MapMan:35.2

Description

No Description!

Coordinates

chr8:-:60681867..60683297

Molecular Weight (calculated)

32996.3 Da

IEP (calculated)

4.949

GRAVY (calculated)

-0.618

Length

302 amino acids

Sequence
(BLAST)

001: MKTVLFRTGS GSIPAVVPGS QRAVSVSTRE SIGKVFNGEK KKGCSSPMIS LYSEVNRRGI RRVSSDSDVI RSGFEGSSVT RKLSKIGSRS LSSIIPEEDC
101: GSEQNELEVL RSIGSLSLTE DRRSYAGDWH RNSIPVDELG FSGGGIGSTK NKKFGGNGDG RDEIDADSLT GGKSDPRKIG AYYKEMLNSD PMNPLLLRNY
201: GKYLHEVERD FVKAEECYGR AILASPGDGE VLSLYGKLVW ETQRDENRAK SYFDQAVHAS PNDCTVLGSY AHFMWEAEGD QDEDEDEERE TVAAGASMVA
301: AY

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.