Factsheet for Bra013269.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
plasma membrane 1
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78813	Canola	mitochondrion	97.82	97.82
Bra021028.1-P	Field mustard	plastid	78.6	68.44
AT4G17940.1	Thale cress	mitochondrion	78.17	65.33
VIT_02s0012g01590.t01	Wine grape	nucleus	48.91	52.09
KRH39558	Soybean	plastid	48.03	43.48
Solyc08g076730.2.1	Tomato	plastid	56.33	42.72
PGSC0003DMT400045174	Potato	plastid	55.46	42.05
GSMUA_Achr4P27320_001	Banana	plastid	48.47	41.89
GSMUA_Achr5P03500_001	Banana	plastid	45.41	41.77
TraesCS1A01G194200.1	Wheat	plastid	41.48	40.25
TraesCS1B01G209200.1	Wheat	plastid	41.48	40.08
KRH74400	Soybean	nucleus, plastid	50.22	39.52
Os10t0576600-01	Rice	plastid	36.68	37.0
Zm00001d030086_P001	Maize	plastid	37.12	34.14
Bra020090.1-P	Field mustard	cytosol	28.82	34.02
EER91874	Sorghum	plastid	36.68	32.56
Bra011339.1-P	Field mustard	plastid	33.62	31.56
Bra006547.1-P	Field mustard	plastid	34.93	29.3
Bra002280.1-P	Field mustard	plastid	34.93	28.17
Bra035194.1-P	Field mustard	nucleus	32.75	24.51
Bra008495.1-P	Field mustard	mitochondrion, nucleus	31.88	24.17
Bra015324.1-P	Field mustard	nucleus	28.38	20.38
HORVU1Hr1G050780.2	Barley	plastid	33.62	20.21
Bra018368.1-P	Field mustard	plastid	24.89	12.21
Bra039995.1-P	Field mustard	plastid	25.33	11.93
Bra031567.1-P	Field mustard	plastid	25.33	11.72
Bra015570.1-P	Field mustard	plastid	24.89	11.09
Bra018168.1-P	Field mustard	plastid	19.65	9.83
Bra019495.1-P	Field mustard	plastid	19.21	9.5

Protein Annotations

EnsemblPlants:Bra013269.1	EnsemblPlants:Bra013269.1-P	EnsemblPlantsGene:Bra013269	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF53	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002545EA7	UniProt:M4D9V9
MapMan:35.2	:	:	:	:	:

Description

AT4G17940 (E=3e-049) | binding

Coordinates

chrA01:+:4635328..4636187

Molecular Weight (calculated)

25251.5 Da

IEP (calculated)

4.452

GRAVY (calculated)

-0.619

Length

229 amino acids

Sequence
(BLAST)

001: MKSLLMRTGS MPVQTRFIPT TISRHNSVES LSTNGDRFSA GKISIDAKSA AGMRRALSES DVIRSERMSK SVVGSKPSPA RIPEEDEQGF SGGGGGGGGS
101: GFSGGYEDRR KIGDYYREML KSNPNSSLLL MNYGKFLYEV ERDLERAEEY YGRAILADPG DGEALSMYGK LIWETKRDEE RAQCYFDQAV NASPDDCMVL
201: GSYAHFMWEA EDDEDEEEEL MVGASPALV

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.