Factsheet for Bra002280.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92483	Canola	plastid	97.89	99.29
CDY35827	Canola	plastid	96.83	94.5
AT5G20190.1	Thale cress	plastid	84.15	82.41
Bra020090.1-P	Field mustard	cytosol	55.28	80.93
Bra006547.1-P	Field mustard	plastid	76.76	79.85
GSMUA_Achr2P15930_001	Banana	cytosol	24.3	57.5
KRH20249	Soybean	plastid	45.42	50.19
KRH03683	Soybean	plastid	45.07	49.04
VIT_11s0016g05430.t01	Wine grape	plastid	46.48	45.83
VIT_09s0002g06810.t01	Wine grape	cytosol	46.13	42.81
Bra035194.1-P	Field mustard	nucleus	41.9	38.89
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	31.34	38.7
PGSC0003DMT400079441	Potato	plastid	31.34	38.36
HORVU7Hr1G090280.1	Barley	mitochondrion	38.73	38.19
TraesCS7A01G377700.1	Wheat	mitochondrion	38.38	37.98
TraesCS7D01G374500.1	Wheat	mitochondrion	37.68	37.81
Os06t0606700-00	Rice	plastid	36.97	37.77
Bra008495.1-P	Field mustard	mitochondrion, nucleus	40.14	37.75
Bra011339.1-P	Field mustard	plastid	32.39	37.7
TraesCS7B01G279400.1	Wheat	mitochondrion	38.38	37.2
Zm00001d046530_P001	Maize	plastid	38.38	36.7
Bra013269.1-P	Field mustard	mitochondrion	28.17	34.93
EER88623	Sorghum	mitochondrion	38.73	34.38
Bra021028.1-P	Field mustard	plastid	27.46	29.66
Os04t0496700-00	Rice	nucleus	18.31	25.24
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	19.01	21.95
Bra015324.1-P	Field mustard	nucleus	21.48	19.12
Bra039995.1-P	Field mustard	plastid	23.24	13.58
Bra018368.1-P	Field mustard	plastid	22.18	13.49
Bra018168.1-P	Field mustard	plastid	20.42	12.66
Bra031567.1-P	Field mustard	plastid	21.13	12.12
Bra015570.1-P	Field mustard	plastid	21.13	11.67
Bra019495.1-P	Field mustard	plastid	18.66	11.45

Protein Annotations

EnsemblPlants:Bra002280.1	EnsemblPlants:Bra002280.1-P	EnsemblPlantsGene:Bra002280	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002544DE7
UniProt:M4CDJ9	MapMan:35.2	:	:	:	:

Description

AT5G20190 (E=9e-095) | binding

Coordinates

chrA10:-:10524855..10525890

Molecular Weight (calculated)

30994.8 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.571

Length

284 amino acids

Sequence
(BLAST)

001: MLLRSASTPL LNSLVHASSP RESPIEAVES VHQIQRPRSL MLSSSSPCCY SSMSVHSSDE SARRMKRTAS ESDLRHLTKP ASKFLSGGGA LMEDVEEGIG
101: FGLTRTSSYD GLSWGLEEDD TEVSGGCGGG GGVIRGGGKG DGSDGEDGDD GTDVHYRKMI EANPGNGIFL SNYAKFLKEV RKDYVRAEEY CGRAILTNPN
201: DGNVLAMYAE LVWTIHKDSS RAESYFNRAV AAAPDDCYVQ ASYARFLWDA DEEEEEEERH EEELEPQTCR MSFFTGPSPI TAMS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.