Factsheet for PGSC0003DMT400079441

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	87.93	88.7
GSMUA_Achr2P15930_001	Banana	cytosol	25.86	50.0
Bra020090.1-P	Field mustard	cytosol	36.21	43.3
PGSC0003DMT400073455	Potato	plastid	40.09	38.91
KRH03683	Soybean	plastid	41.81	37.16
KRH20249	Soybean	plastid	40.95	36.97
VIT_11s0016g05430.t01	Wine grape	plastid	44.4	35.76
VIT_09s0002g06810.t01	Wine grape	cytosol	46.55	35.29
HORVU7Hr1G090280.1	Barley	mitochondrion	41.38	33.33
CDY45101	Canola	plastid	39.22	32.16
TraesCS7D01G374500.1	Wheat	mitochondrion	39.22	32.16
TraesCS7A01G377700.1	Wheat	mitochondrion	39.66	32.06
Os06t0606700-00	Rice	plastid	38.36	32.01
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	43.53	31.56
CDX92483	Canola	plastid	37.93	31.43
TraesCS7B01G279400.1	Wheat	mitochondrion	39.66	31.4
CDY60380	Canola	plastid	36.21	31.34
Bra002280.1-P	Field mustard	plastid	38.36	31.34
AT5G20190.1	Thale cress	plastid	38.79	31.03
Zm00001d046530_P001	Maize	plastid	39.66	30.98
CDY35827	Canola	plastid	38.79	30.93
CDX88849	Canola	plastid	34.91	30.11
Bra006547.1-P	Field mustard	plastid	35.34	30.04
EER88623	Sorghum	mitochondrion	39.22	28.44
Os04t0496700-00	Rice	nucleus	22.84	25.73
PGSC0003DMT400045174	Potato	plastid	31.9	24.5
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	21.98	20.73
PGSC0003DMT400022129	Potato	plastid	31.03	20.0
PGSC0003DMT400003940	Potato	nucleus	25.0	14.43
PGSC0003DMT400078227	Potato	plastid	21.98	9.22
PGSC0003DMT400069757	Potato	plastid	17.24	8.95
PGSC0003DMT400035002	Potato	plastid	26.72	8.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400079441	EnsemblPlantsGene:PGSC0003DMG400030925	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR26312
PANTHER:PTHR26312:SF75	PFscan:PS50293	PGSC:PGSC0003DMG400030925	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000295D4F5
UniProt:M1D1U9	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030925]

Coordinates

chr7:-:4558382..4561474

Molecular Weight (calculated)

25786.9 Da

IEP (calculated)

4.355

GRAVY (calculated)

-0.618

Length

232 amino acids

Sequence
(BLAST)

001: MSRVLSETDL NRASSSNSSN SCCMALHNLL LPTTFDEEDK EDEIGLTNRL MLLSNSGLEM VERHEVEEEK HTRAVEQLVV DGGGSGGDGR GKKCGGGGGG
101: DSDGDSSEFS VDLYYTKMIQ ANPGNSLLLG NYARFLKEVS GNLVKAEEYC ERAMLANPSD GNVLSFYADL IWRTHKDVPR ANNYFDKAVK VAPNDCYVLA
201: SYAHFLWDVE DVEEEKEQEH RQYQMNDNNL PI

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.