CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03683	Soybean	plastid	93.39	91.95
GSMUA_Achr2P15930_001	Banana	cytosol	28.4	60.83
KRH09728	Soybean	cytosol	23.35	53.1
VIT_11s0016g05430.t01	Wine grape	plastid	57.98	51.74
Bra020090.1-P	Field mustard	cytosol	36.58	48.45
CDY60380	Canola	plastid	50.19	48.13
VIT_09s0002g06810.t01	Wine grape	cytosol	57.2	48.04
CDX88849	Canola	plastid	49.03	46.84
Bra006547.1-P	Field mustard	plastid	49.42	46.52
CDX92483	Canola	plastid	49.81	45.71
Bra002280.1-P	Field mustard	plastid	50.19	45.42
AT5G20190.1	Thale cress	plastid	50.97	45.17
CDY45101	Canola	plastid	49.42	44.88
CDY35827	Canola	plastid	49.81	43.99
PGSC0003DMT400079441	Potato	plastid	36.97	40.95
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	36.19	40.43
TraesCS7A01G377700.1	Wheat	mitochondrion	45.14	40.42
TraesCS7D01G374500.1	Wheat	mitochondrion	44.36	40.28
HORVU7Hr1G090280.1	Barley	mitochondrion	45.14	40.28
TraesCS7B01G279400.1	Wheat	mitochondrion	45.14	39.59
Os06t0606700-00	Rice	plastid	42.8	39.57
KRH23575	Soybean	plastid	39.3	39.3
Zm00001d046530_P001	Maize	plastid	44.75	38.72
KRH44461	Soybean	plastid	44.36	36.19
KRH47446	Soybean	plastid	43.58	35.56
KRH39558	Soybean	plastid	34.63	35.18
EER88623	Sorghum	mitochondrion	43.58	35.0
KRG95736	Soybean	cytosol, nucleus, plastid	26.07	31.46
KRH74400	Soybean	nucleus, plastid	34.63	30.58
Os04t0496700-00	Rice	nucleus	21.79	27.18
KRH67454	Soybean	nucleus	34.24	24.65
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	21.01	21.95
KRH34549	Soybean	nucleus	23.74	15.6
KRG92250	Soybean	cytosol	22.57	14.99
KRH46437	Soybean	plastid	26.85	13.14
KRG98335	Soybean	plastid	26.07	12.59
KRH73162	Soybean	mitochondrion	21.01	11.2
KRH14978	Soybean	cytosol, plastid	19.46	10.48

Protein Annotations

EMBL:ACUP02008250	EnsemblPlants:KRH20249	EnsemblPlantsGene:GLYMA_13G165800	EntrezGene:100784254	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	PFscan:PS50293	ProteinID:KRH20249	ProteinID:KRH20249.1	SEG:seg
SUPFAM:SSF48452	UniParc:UPI000233B4FD	UniProt:I1LZW9	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr13:-:28061619..28064257

Molecular Weight (calculated)

27593.5 Da

IEP (calculated)

4.289

GRAVY (calculated)

-0.540

Length

257 amino acids

Sequence
(BLAST)

001: MTTTTMLLRS SSTPILNSRI PHPKDSPHEP EILHRSPRTR SLTLSASSSS LSPVEASPSR MTRALSETDL SARSKTSSFG SALFSFTESD EGDGVGGGGG
101: GDGWDNGDGG GSGFWDSNNG NDSTDLYYRT MIEANPGNPL FLGNYARYLK EVRGDYVKAE EYCGRAILAN PNDGKVLSMY ADLIWESQKD ASRAETYFDQ
201: AVKAAPDDCY VLASYAHFLW DAEGEEDVEV QEDSSEISPS FLHGAAPLPP PLAAASS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.