Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95736 | Soybean | cytosol, nucleus, plastid | 55.46 | 92.96 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 22.69 | 66.94 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 36.69 | 48.34 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 14.85 | 44.92 |
| Solyc09g064630.2.1 | Tomato | plastid | 44.54 | 44.54 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 36.13 | 44.48 |
| PGSC0003DMT400022129 | Potato | plastid | 44.54 | 44.17 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 37.82 | 42.99 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 36.69 | 41.59 |
| EER92881 | Sorghum | plastid | 37.82 | 39.82 |
| Os03t0140700-01 | Rice | plastid | 36.97 | 38.94 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 36.41 | 38.12 |
| Zm00001d027613_P002 | Maize | plastid | 37.25 | 37.36 |
| Os04t0510600-01 | Rice | plastid | 28.85 | 37.18 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 28.01 | 37.04 |
| TraesCS2A01G367000.1 | Wheat | plastid | 28.01 | 37.04 |
| Zm00001d003035_P001 | Maize | plastid | 26.89 | 34.53 |
| KRH20249 | Soybean | plastid | 24.65 | 34.24 |
| KRH03683 | Soybean | plastid | 24.93 | 34.1 |
| KRH09728 | Soybean | cytosol | 10.64 | 33.63 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 27.45 | 32.89 |
| EES12482 | Sorghum | nucleus | 29.13 | 31.52 |
| KRH39558 | Soybean | plastid | 22.13 | 31.23 |
| CDY18241 | Canola | nucleus | 23.53 | 28.97 |
| KRH23575 | Soybean | plastid | 20.73 | 28.79 |
| KRH44461 | Soybean | plastid | 24.65 | 27.94 |
| CDX89816 | Canola | nucleus | 22.69 | 27.84 |
| KRH74400 | Soybean | nucleus, plastid | 22.41 | 27.49 |
| KRH47446 | Soybean | plastid | 22.97 | 26.03 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 22.13 | 25.48 |
| Bra015324.1-P | Field mustard | nucleus | 22.69 | 25.39 |
| CDY59180 | Canola | cytosol | 12.32 | 24.86 |
| KRG92250 | Soybean | cytosol | 24.93 | 23.0 |
| KRH34549 | Soybean | nucleus | 24.37 | 22.25 |
| KRH46437 | Soybean | plastid | 18.77 | 12.76 |
| KRH73162 | Soybean | mitochondrion | 17.09 | 12.66 |
| KRG98335 | Soybean | plastid | 17.93 | 12.03 |
| KRH14978 | Soybean | cytosol, plastid | 15.97 | 11.95 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100788436 | MapMan:35.2 | EMBL:ACUP02002059 | EnsemblPlantsGene:GLYMA_03G167200 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:HAT | UniProt:I1JP77 | InterPro:IPR011990 | InterPro:IPR013026 | ProteinID:KRH67453.1 |
| EnsemblPlants:KRH67454 | ProteinID:KRH67454 | ProteinID:KRH67454.1 | ProteinID:KRH67455.1 | ProteinID:KRH67456.1 | ProteinID:KRH67457.1 |
| ProteinID:KRH67458.1 | EMBL:KT031225 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF89 | SMART:SM00386 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000233A62E | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:-:38162825..38166675
Molecular Weight (calculated)
39121.8 Da
IEP (calculated)
4.654
GRAVY (calculated)
-0.720
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLRSSSTPV LGSLLSSFTD SPNNNIHSET CHALKHFPPT TVPQHYHKLT FHQTGSSACG SSPISPSIGE LERQNKGLIR RVQSDGNLQD LAFFSCNNEE
101: RFEFSDPSKR FSARHRSLVL ETIPSFSTAK HNGLSEEEED EEMESESEDG FSVLNGGKGV IFSEEVRVKD GVCRVSFGDQ EEVSSGKEMY LAKGLGVECC
201: GDGIGGCRGG GGGGGDHNPL GSGGNDGERH GVEEYYKKMV RENPGDPLFL RNYANFLYQC KQDREGAEEY YSRAILADPN DGEVLSQYGK LVWELHHNQE
301: RASSYFERAV QASPEDSHVQ AAYASFLWDT EEDEDGINEP QSLPPHSHQG AVATAGA
101: RFEFSDPSKR FSARHRSLVL ETIPSFSTAK HNGLSEEEED EEMESESEDG FSVLNGGKGV IFSEEVRVKD GVCRVSFGDQ EEVSSGKEMY LAKGLGVECC
201: GDGIGGCRGG GGGGGDHNPL GSGGNDGERH GVEEYYKKMV RENPGDPLFL RNYANFLYQC KQDREGAEEY YSRAILADPN DGEVLSQYGK LVWELHHNQE
301: RASSYFERAV QASPEDSHVQ AAYASFLWDT EEDEDGINEP QSLPPHSHQG AVATAGA
001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
Arabidopsis Description
TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.