CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027613_P002	Maize	plastid	88.2	83.99
Os03t0140700-01	Rice	plastid	73.45	73.45
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	66.96	72.29
TraesCS4B01G342900.1	Wheat	mitochondrion	65.78	70.79
HORVU5Hr1G031990.1	Barley	nucleus	22.71	65.25
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	64.6	64.22
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	20.35	57.02
GSMUA_Achr1P01000_001	Banana	plastid	38.64	48.34
KRG95736	Soybean	cytosol, nucleus, plastid	28.02	44.6
GSMUA_Achr5P15660_001	Banana	plastid	38.05	44.48
KRH67454	Soybean	nucleus	39.82	37.82
Solyc09g064630.2.1	Tomato	plastid	36.87	35.01
PGSC0003DMT400022129	Potato	plastid	37.17	35.0
EES12482	Sorghum	nucleus	33.33	34.24
EER88623	Sorghum	mitochondrion	28.32	30.0
EER91874	Sorghum	plastid	22.42	29.46
CDY59180	Canola	cytosol	13.27	25.42
CDY18241	Canola	nucleus	21.24	24.83
CDX89816	Canola	nucleus	21.24	24.74
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	21.83	23.87
VIT_05s0049g01950.t01	Wine grape	plastid	36.58	23.35
Bra015324.1-P	Field mustard	nucleus	21.53	22.88
KRG92250	Soybean	cytosol	24.78	21.71
KRH34549	Soybean	nucleus	24.48	21.23
Solyc09g090930.2.1	Tomato	nucleus	24.19	20.6
PGSC0003DMT400003940	Potato	nucleus	23.89	20.15
EER93981	Sorghum	plastid	18.58	17.03
Solyc03g005710.1.1	Tomato	cytosol	18.88	16.93
PGSC0003DMT400035002	Potato	plastid	31.56	15.11
EES01775	Sorghum	plastid	22.42	14.34
KXG22120	Sorghum	plastid	20.06	13.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:8085508	UniProt:C5WYW1	EnsemblPlants:EER92881	ProteinID:EER92881
ProteinID:EER92881.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF89	EnsemblPlantsGene:SORBI_3001G509300
SUPFAM:SSF48452	unigene:Sbi.18408	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001A82C24
RefSeq:XP_002465883.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:77723986..77726360

Molecular Weight (calculated)

36025.1 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.579

Length

339 amino acids

Sequence
(BLAST)

001: MLVRSASTPV LGALLPSGSH SPAVSSPAVH FPESPAAAAY HPPPISCHLA GPGSGSDHER TRGLGTGIRR TCSEDNLASL AGVRADDHHH HHLPPSGKGA
101: PRARPVPLET IQSFRGRQAS STDDEEEDEE EDAYEVEREL RFGQFSFAGG DGNGSTYSQE HPLFLARGLG IDRLGSGLLS ADGGGGFGGS DGGGGGNLVA
201: SGNGGDRSGI EMHYKKMIEE DPCNGLFLRN YAQFLYQVKG DYRRAEEYYS RAILADPDDG ELLSEYAKLV WDVHRDEERA SSYFERAAKA SPQNSHVLAA
301: HAAFLWDTDD DEEGGGDVLS CYTGFAQPAH SSPLASATT

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.