CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
cytosol 1
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, peroxisome, plasma membrane
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013919_P001	Maize	plastid	87.57	89.26
Zm00001d032535_P002	Maize	plastid	83.51	86.55
TraesCS1A01G172600.1	Wheat	plastid	61.89	66.57
TraesCS1D01G166000.1	Wheat	plastid	61.35	65.99
TraesCS1B01G191700.1	Wheat	plastid	61.08	65.51
Os10t0501900-01	Rice	plastid	62.43	63.64
HORVU1Hr1G045530.3	Barley	cytosol	26.22	34.28
EER88623	Sorghum	mitochondrion	16.22	18.75
EER91874	Sorghum	plastid	12.97	18.6
EER92881	Sorghum	plastid	17.03	18.58
KXG22120	Sorghum	plastid	24.05	17.45
EES01775	Sorghum	plastid	24.05	16.79
EES12482	Sorghum	nucleus	13.78	15.45

Protein Annotations

EnsemblPlants:EER93981	EnsemblPlantsGene:SORBI_3001G203100	EntrezGene:8067088	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF77	PFscan:PS50293	ProteinID:EER93981	ProteinID:EER93981.1	RefSeq:XP_002466983.1	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0001A8278B	UniProt:C5WWF5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:-:18447180..18448979

Molecular Weight (calculated)

38875.5 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.316

Length

370 amino acids

Sequence
(BLAST)

001: MTPASVVAMP RSVPLALAPF PAAPARAGER RSARSFRPAA CGAGDDQQQQ QPPSMAAVPA SLRAIQARRK QAAAQRGVPR ATATSAAGCA VAALVKAVEA
101: VQGAAAGGAA EAARGAGGAV AWVFSKVHLQ SPDLAVGLLG MVACCLGTIV EAERGRMEAK KPEAAAAAAA AGNAADQADH HPDGNGDAAE EPPEDDMPEL
201: VEADMEKELW SQIGILHGGG LFGDSYGYGY GQEELDEEEI KEIDSARARR RKAAYERVIA SGGGANSLIL SNYAQLLYEF DKDINRAEMY FKQAVAAEPP
301: DGEAMRRYGM FLWHARGDMG GAEDMFTGAI DEEPESSHHR SSYAWFLWMT GGVETCLIDS GKQNNGNDVE

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.