Factsheet for Solyc09g090930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003940	Potato	nucleus	94.22	93.28
Solyc03g005710.1.1	Tomato	cytosol	44.22	46.56
KRG92250	Soybean	cytosol	42.96	44.19
KRH34549	Soybean	nucleus	41.21	41.94
VIT_05s0049g01950.t01	Wine grape	plastid	50.75	38.04
HORVU5Hr1G031990.1	Barley	nucleus	10.8	36.44
Os04t0510600-01	Rice	plastid	21.36	30.69
TraesCS2A01G367000.1	Wheat	plastid	20.1	29.63
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	19.85	29.26
Zm00001d003035_P001	Maize	plastid	18.59	26.62
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	19.6	26.17
GSMUA_Achr1P01000_001	Banana	plastid	17.59	25.83
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	19.6	24.84
EES12482	Sorghum	nucleus	20.35	24.55
TraesCS4B01G342900.1	Wheat	mitochondrion	19.35	24.44
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	14.07	24.35
Os03t0140700-01	Rice	plastid	20.6	24.19
EER92881	Sorghum	plastid	20.6	24.19
Zm00001d027613_P002	Maize	plastid	20.35	22.75
Solyc09g064630.2.1	Tomato	plastid	20.1	22.41
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	19.1	22.29
Solyc06g068130.2.1	Tomato	plastid	13.07	21.67
GSMUA_Achr5P15660_001	Banana	plastid	15.58	21.38
Solyc08g076730.2.1	Tomato	plastid	14.82	19.54
Solyc03g116670.2.1	Tomato	nucleus	13.57	17.14
Solyc05g052700.2.1	Tomato	extracellular	10.55	9.31
Solyc06g076850.2.1	Tomato	plastid	12.56	9.07

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	UniProt:K4CWB9	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF78	SMART:SM00386
SUPFAM:SSF48452	EnsemblPlantsGene:Solyc09g090930.2	EnsemblPlants:Solyc09g090930.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276B19E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:70330002..70334314

Molecular Weight (calculated)

44716.0 Da

IEP (calculated)

4.001

GRAVY (calculated)

-0.683

Length

398 amino acids

Sequence
(BLAST)

001: MLPKEPSFCI YNTEDGVDEM KENQDLVRSV TIGDIVSDIG SSDFSFGKKG MGLIEEDENE DEEKRVFYEV NELGFEESEQ VISSKYHGGV EFEPLDFDGN
101: GDVEEYYKRV LKEDPCNPLF LRNYAQLLQS KGDLPGAEHY YFQATLADPK DGDTLSQYAK LVWELHQDKD RASDYFERAV RTAPENSHVL GAYASFLWDI
201: TDDESEDEMN TQSDKTKIEE SGEATVSRNL DYEEADRPVS PPLHLAAGLG IGVNLVGGSS PVDYTAAVSD MDGNAEEEYM RMIKEYPHHS VLLRNYAQFL
301: SQSKGDLLGA EEYYSHAILA DPTDGETISQ YAMLIWQLHQ DKDKASTYFK RAVQASPQDS DVLAAYARFL WQTEEDEDGE EDETLGDHNG APLLQGVA

Best Arabidopsis Sequence Match ( AT1G04530.1 )
(BLAST)

001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE

Arabidopsis Description

TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.