Factsheet for TraesCS5A01G512000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G342900.1	Wheat	mitochondrion	92.99	92.7
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	87.9	80.94
HORVU5Hr1G031990.1	Barley	nucleus	29.3	77.97
Os03t0140700-01	Rice	plastid	73.89	68.44
EER92881	Sorghum	plastid	72.29	66.96
Zm00001d027613_P002	Maize	plastid	71.97	63.48
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	21.66	56.2
GSMUA_Achr1P01000_001	Banana	plastid	40.13	46.49
GSMUA_Achr5P15660_001	Banana	plastid	40.13	43.45
KRG95736	Soybean	cytosol, nucleus, plastid	28.03	41.31
TraesCS2A01G367000.1	Wheat	plastid	35.03	40.74
KRH67454	Soybean	nucleus	42.99	37.82
Solyc09g064630.2.1	Tomato	plastid	41.72	36.69
PGSC0003DMT400022129	Potato	plastid	41.4	36.11
TraesCS1A01G194200.1	Wheat	plastid	23.25	30.93
TraesCS7A01G377700.1	Wheat	mitochondrion	26.75	29.27
CDY59180	Canola	cytosol	14.97	26.55
CDY18241	Canola	nucleus	23.25	25.17
CDX89816	Canola	nucleus	22.93	24.74
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	23.57	23.87
VIT_05s0049g01950.t01	Wine grape	plastid	38.22	22.6
Bra015324.1-P	Field mustard	nucleus	22.93	22.57
KRH34549	Soybean	nucleus	25.48	20.46
KRG92250	Soybean	cytosol	25.16	20.41
PGSC0003DMT400003940	Potato	nucleus	25.16	19.65
Solyc09g090930.2.1	Tomato	nucleus	24.84	19.6
TraesCS1A01G172600.1	Wheat	plastid	19.11	17.44
Solyc03g005710.1.1	Tomato	cytosol	20.7	17.2
PGSC0003DMT400035002	Potato	plastid	36.31	16.1
TraesCS1A01G278600.1	Wheat	plastid	21.97	14.68
TraesCS3A01G368600.1	Wheat	plastid	20.7	13.51

Protein Annotations

EnsemblPlants:TraesCS5A01G512000.1	EnsemblPlantsGene:TraesCS5A01G512000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF89
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5A:+:675955902..675957162

Molecular Weight (calculated)

32898.5 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.493

Length

314 amino acids

Sequence
(BLAST)

001: MLVRSASTPV LGALHATSGA GGHSPAVHFA ESSPTVAYHP PAISCSLSAG GGGGSASDHE RSRGGGGGLR RACSDGNLAA LGGRAEDHHH LPPRPRPALE
101: TIRSFTARDG ARGEEEEEDD DQETSFGQFG FGSTYAQEHP LFLARGLGID RLGSGLLSAD CGGGIDGGSG GGYLVASGGG GGDRSGIEIH YKRLIEEDPC
201: NGLFLRNYAQ FLYQVKGDRR RAEEYYSRAI LADPNDGELL SEYARLVWEV HGDEERASSY FHRAARADPH NSHVLAAQAA FLWDTDDGAG PEDDDATSYA
301: GFLAAHPSMA SATS

Best Arabidopsis Sequence Match ( AT1G04530.1 )
(BLAST)

001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE

Arabidopsis Description

TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.