Factsheet for Solyc07g008210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079441	Potato	plastid	88.7	87.93
GSMUA_Achr2P15930_001	Banana	cytosol	26.96	51.67
Bra020090.1-P	Field mustard	cytosol	36.52	43.3
KRH03683	Soybean	plastid	41.74	36.78
KRH20249	Soybean	plastid	40.43	36.19
Solyc06g068130.2.1	Tomato	plastid	36.96	35.42
VIT_09s0002g06810.t01	Wine grape	cytosol	46.09	34.64
VIT_11s0016g05430.t01	Wine grape	plastid	43.04	34.38
TraesCS7D01G374500.1	Wheat	mitochondrion	40.87	33.22
TraesCS7A01G377700.1	Wheat	mitochondrion	41.3	33.1
HORVU7Hr1G090280.1	Barley	mitochondrion	41.3	32.99
Os06t0606700-00	Rice	plastid	39.13	32.37
CDY45101	Canola	plastid	39.13	31.8
CDX92483	Canola	plastid	38.7	31.79
Zm00001d046530_P001	Maize	plastid	40.87	31.65
Solyc03g116670.2.1	Tomato	nucleus	43.04	31.43
TraesCS7B01G279400.1	Wheat	mitochondrion	40.0	31.4
Bra002280.1-P	Field mustard	plastid	38.7	31.34
AT5G20190.1	Thale cress	plastid	39.13	31.03
CDY60380	Canola	plastid	36.09	30.97
CDY35827	Canola	plastid	39.13	30.93
CDX88849	Canola	plastid	34.78	29.74
Bra006547.1-P	Field mustard	plastid	35.22	29.67
EER88623	Sorghum	mitochondrion	40.87	29.38
Os04t0496700-00	Rice	nucleus	23.91	26.7
Solyc08g076730.2.1	Tomato	plastid	32.17	24.5
Solyc09g064630.2.1	Tomato	plastid	31.3	20.17
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	20.87	19.51
Solyc09g090930.2.1	Tomato	nucleus	24.35	14.07
Solyc06g076850.2.1	Tomato	plastid	23.91	9.98
Solyc03g005710.1.1	Tomato	cytosol	16.09	9.79
Solyc05g052700.2.1	Tomato	extracellular	19.13	9.76

Protein Annotations

EnsemblPlants:Solyc07g008210.2.1	EnsemblPlantsGene:Solyc07g008210.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000276B203	UniProt:K4CBU0	MapMan:35.2

Description

No Description!

Coordinates

chr7:-:2947746..2951040

Molecular Weight (calculated)

25614.3 Da

IEP (calculated)

4.113

GRAVY (calculated)

-0.729

Length

230 amino acids

Sequence
(BLAST)

001: MSRASSESDL NSSNSCCMAL HNLQLPITFD EEDKEDEVGL TNGLMLLSNS GLEMTERHEV EEEKHTRAVE QLVVDGGGSG GDGSGKKCGG DGDGDGDSDG
101: DSFEYSTDLY YTKMIQADPG NSLLLGNYAR FLKEVSGNMV KAEEYCERAI LANPSDGNVL SFYADLIWRA HKDVPRANNY FHKALKVAPN DCYVLASYAH
201: FLWDVEDEEE EEEKEQEHRQ YQMNDNNLSI

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.