Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60380 | Canola | plastid | 79.31 | 85.82 |
| CDX88849 | Canola | plastid | 78.97 | 85.13 |
| CDX92483 | Canola | plastid | 81.38 | 84.29 |
| Bra002280.1-P | Field mustard | plastid | 82.41 | 84.15 |
| Bra006547.1-P | Field mustard | plastid | 78.62 | 83.52 |
| CDY35827 | Canola | plastid | 83.79 | 83.51 |
| Bra020090.1-P | Field mustard | cytosol | 53.45 | 79.9 |
| CDY45101 | Canola | plastid | 77.93 | 79.86 |
| GSMUA_Achr2P15930_001 | Banana | cytosol | 22.41 | 54.17 |
| KRH20249 | Soybean | plastid | 45.17 | 50.97 |
| KRH03683 | Soybean | plastid | 44.83 | 49.81 |
| VIT_11s0016g05430.t01 | Wine grape | plastid | 46.55 | 46.88 |
| VIT_09s0002g06810.t01 | Wine grape | cytosol | 45.52 | 43.14 |
| Solyc07g008210.2.1 | Tomato | cytosol, nucleus, plastid | 31.03 | 39.13 |
| PGSC0003DMT400079441 | Potato | plastid | 31.03 | 38.79 |
| AT4G32340.1 | Thale cress | mitochondrion | 31.72 | 38.66 |
| AT1G80130.1 | Thale cress | nucleus | 40.34 | 38.36 |
| HORVU7Hr1G090280.1 | Barley | mitochondrion | 37.24 | 37.5 |
| TraesCS7D01G374500.1 | Wheat | mitochondrion | 36.55 | 37.46 |
| TraesCS7A01G377700.1 | Wheat | mitochondrion | 36.9 | 37.28 |
| Zm00001d046530_P001 | Maize | plastid | 37.59 | 36.7 |
| Os06t0606700-00 | Rice | plastid | 34.83 | 36.33 |
| TraesCS7B01G279400.1 | Wheat | mitochondrion | 36.21 | 35.84 |
| EER88623 | Sorghum | mitochondrion | 37.24 | 33.75 |
| AT4G17940.1 | Thale cress | mitochondrion | 31.03 | 32.85 |
| Os04t0496700-00 | Rice | nucleus | 17.24 | 24.27 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 18.97 | 22.36 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 21.38 | 20.0 |
| AT2G29670.2 | Thale cress | plastid | 22.76 | 12.31 |
| AT1G07280.1 | Thale cress | plastid | 22.41 | 11.78 |
| AT3G47080.1 | Thale cress | plastid | 19.31 | 10.87 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EntrezGene:832142 | UniProt:A0A178UT17 | ProteinID:AED92812.1 | ArrayExpress:AT5G20190 |
| EnsemblPlantsGene:AT5G20190 | RefSeq:AT5G20190 | TAIR:AT5G20190 | RefSeq:AT5G20190-TAIR-G | EnsemblPlants:AT5G20190.1 | TAIR:AT5G20190.1 |
| ncoils:Coil | UniProt:F4K464 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR011990 | InterPro:IPR013026 | RefSeq:NP_197519.1 | ProteinID:OAO96012.1 | PO:PO:0000293 | PFscan:PS50293 |
| PANTHER:PTHR26312 | PANTHER:PTHR26312:SF75 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0000162526 |
| SEG:seg | : | : | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
Coordinates
chr5:+:6813762..6815873
Molecular Weight (calculated)
31820.8 Da
IEP (calculated)
4.832
GRAVY (calculated)
-0.610
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.