Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH09728 | Soybean | cytosol | 45.0 | 47.79 |
| Bra020090.1-P | Field mustard | cytosol | 56.67 | 35.05 |
| Os06t0606700-00 | Rice | plastid | 65.83 | 28.42 |
| KRH20249 | Soybean | plastid | 60.83 | 28.4 |
| KRH03683 | Soybean | plastid | 60.83 | 27.97 |
| Solyc07g008210.2.1 | Tomato | cytosol, nucleus, plastid | 51.67 | 26.96 |
| Zm00001d046530_P001 | Maize | plastid | 66.67 | 26.94 |
| TraesCS7D01G374500.1 | Wheat | mitochondrion | 63.33 | 26.86 |
| TraesCS7A01G377700.1 | Wheat | mitochondrion | 63.33 | 26.48 |
| KRH23575 | Soybean | plastid | 56.67 | 26.46 |
| HORVU7Hr1G090280.1 | Barley | mitochondrion | 62.5 | 26.04 |
| PGSC0003DMT400079441 | Potato | plastid | 50.0 | 25.86 |
| TraesCS7B01G279400.1 | Wheat | mitochondrion | 62.5 | 25.6 |
| CDY60380 | Canola | plastid | 56.67 | 25.37 |
| EER88623 | Sorghum | mitochondrion | 65.83 | 24.69 |
| CDX88849 | Canola | plastid | 55.0 | 24.54 |
| CDY45101 | Canola | plastid | 57.5 | 24.38 |
| Bra002280.1-P | Field mustard | plastid | 57.5 | 24.3 |
| CDX92483 | Canola | plastid | 56.67 | 24.29 |
| PGSC0003DMT400073455 | Potato | plastid | 48.33 | 24.27 |
| Bra006547.1-P | Field mustard | plastid | 55.0 | 24.18 |
| VIT_11s0016g05430.t01 | Wine grape | plastid | 57.5 | 23.96 |
| AT4G32340.1 | Thale cress | mitochondrion | 47.5 | 23.95 |
| Bra011339.1-P | Field mustard | plastid | 48.33 | 23.77 |
| GSMUA_Achr5P03500_001 | Banana | plastid | 49.17 | 23.69 |
| CDX75237 | Canola | plastid | 48.33 | 23.39 |
| Os04t0496700-00 | Rice | nucleus | 40.0 | 23.3 |
| CDX68837 | Canola | mitochondrion, plastid | 48.33 | 23.2 |
| CDY35827 | Canola | plastid | 55.83 | 23.02 |
| Solyc06g068130.2.1 | Tomato | plastid | 45.83 | 22.92 |
| VIT_09s0002g06810.t01 | Wine grape | cytosol | 57.5 | 22.55 |
| AT5G20190.1 | Thale cress | plastid | 54.17 | 22.41 |
| GSMUA_Achr4P27320_001 | Banana | plastid | 47.5 | 21.51 |
| PGSC0003DMT400001660 | Potato | mitochondrion, nucleus, plastid | 55.83 | 20.94 |
| AT1G80130.1 | Thale cress | nucleus | 51.67 | 20.33 |
| Solyc03g116670.2.1 | Tomato | nucleus | 53.33 | 20.32 |
| Bra008495.1-P | Field mustard | mitochondrion, nucleus | 50.0 | 19.87 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 44.17 | 19.56 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 40.0 | 19.51 |
| KRH44461 | Soybean | plastid | 50.83 | 19.37 |
| CDY39992 | Canola | nucleus | 49.17 | 19.28 |
| CDY41120 | Canola | mitochondrion | 49.17 | 19.22 |
| CDY37568 | Canola | nucleus | 50.0 | 19.11 |
| Bra035194.1-P | Field mustard | nucleus | 47.5 | 18.63 |
| KRH47446 | Soybean | plastid | 48.33 | 18.41 |
| CDX87295 | Canola | nucleus | 36.67 | 17.39 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 35.83 | 14.83 |
| GSMUA_Achr11P... | Banana | plastid | 31.67 | 7.62 |
| GSMUA_Achr8P02280_001 | Banana | plastid | 31.67 | 7.6 |
| GSMUA_Achr9P03650_001 | Banana | plastid | 31.67 | 7.5 |
| GSMUA_Achr6P33690_001 | Banana | plastid | 31.67 | 7.12 |
| GSMUA_Achr5P28840_001 | Banana | cytosol | 30.83 | 6.6 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P15930_001 | EnsemblPlants:GSMUA_Achr2T15930_001 | EnsemblPlantsGene:GSMUA_Achr2G15930_001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 |
| PANTHER:PTHR26312:SF75 | PFscan:PS50293 | SUPFAM:SSF48452 | UniParc:UPI0002950FCA | UniProt:M0S8D4 | MapMan:35.2 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G15930_001]
Coordinates
chr2:+:17050340..17052125
Molecular Weight (calculated)
13043.0 Da
IEP (calculated)
4.044
GRAVY (calculated)
-0.303
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKADPANSL ILGNYAKFLK DVRGDVAKAQ EYCERAIVAN PGDAEVLALY ADLVWEANRD APRAESYFAR AVQAAPDDCY ITASYARFLW DADEEDDTNS
101: NQYPPPIVQG ATSPPIAAAS
101: NQYPPPIVQG ATSPPIAAAS
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.