Factsheet for GSMUA_Achr5P28840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P02280_001	Banana	plastid	57.4	64.4
GSMUA_Achr11P...	Banana	plastid	53.12	59.72
GSMUA_Achr9P03650_001	Banana	plastid	53.65	59.37
GSMUA_Achr6P33690_001	Banana	plastid	55.08	57.87
CDY02002	Canola	cytosol, mitochondrion, nucleus	14.97	55.26
TraesCS3B01G400100.1	Wheat	plastid	38.5	45.09
TraesCS3D01G361500.1	Wheat	plastid	38.5	45.0
Os01t0855200-01	Rice	plastid	40.82	44.73
HORVU3Hr1G084970.2	Barley	plastid	38.5	44.72
TraesCS3A01G368600.1	Wheat	plastid	38.32	44.7
Zm00001d012325_P001	Maize	plastid	39.04	42.44
VIT_06s0004g06290.t01	Wine grape	plastid	39.93	42.34
CDY51354	Canola	plastid	36.19	42.12
Bra039995.1-P	Field mustard	plastid	36.19	41.77
Os05t0447700-01	Rice	plastid	35.83	41.53
Zm00001d042812_P001	Maize	plastid	38.68	41.49
Bra018368.1-P	Field mustard	plastid	34.4	41.33
EES01775	Sorghum	plastid	39.04	41.32
TraesCS1D01G277900.1	Wheat	plastid	34.76	41.14
TraesCS1B01G287500.1	Wheat	plastid	35.12	41.13
KRG98335	Soybean	plastid	38.5	40.6
KRH46437	Soybean	plastid	37.97	40.57
CDY06694	Canola	plastid	37.08	40.47
Bra015570.1-P	Field mustard	plastid	37.08	40.47
CDY10264	Canola	plastid	37.08	40.23
TraesCS1A01G278600.1	Wheat	plastid	33.69	40.21
CDY06247	Canola	plastid	35.29	40.0
Bra031567.1-P	Field mustard	plastid	35.29	40.0
AT2G29670.2	Thale cress	plastid	38.15	39.93
Solyc06g076850.2.1	Tomato	plastid	39.04	39.75
CDX97868	Canola	plastid	35.47	39.64
KXG22120	Sorghum	plastid	35.83	39.41
CDY09927	Canola	plastid	34.58	39.19
PGSC0003DMT400078227	Potato	plastid	38.32	38.88
Zm00001d038274_P002	Maize	plastid	34.76	38.84
AT1G07280.1	Thale cress	plastid	37.97	38.59
HORVU1Hr1G073460.2	Barley	plastid	35.12	38.48
Zm00001d010075_P001	Maize	plastid	35.65	38.1
CDX99068	Canola	plastid	28.16	34.5
Bra018168.1-P	Field mustard	plastid	28.16	34.5
Bra019495.1-P	Field mustard	plastid	27.63	33.48
CDX86126	Canola	plastid	28.88	33.33
AT3G47080.1	Thale cress	plastid	29.59	32.23
CDY58299	Canola	plastid	27.63	31.96
GSMUA_Achr2P15930_001	Banana	cytosol	6.6	30.83
CDY38075	Canola	plastid	22.82	30.19
GSMUA_Achr4P27320_001	Banana	plastid	10.16	21.51
GSMUA_Achr5P03500_001	Banana	plastid	9.45	21.29
GSMUA_Achr1P01000_001	Banana	plastid	9.45	19.56
GSMUA_Achr5P15660_001	Banana	plastid	8.73	16.9

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.25.40.10	Gene3D:3.90.70.40	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004843	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G28840_001	EnsemblPlants:GSMUA_Achr5P28840_001
EnsemblPlants:GSMUA_Achr5T28840_001	InterPro:IPR006155	InterPro:IPR011990	InterPro:IPR013026	InterPro:Josephin	UniProt:M0T2K8
PFAM:PF02099	PFscan:PS50293	PFscan:PS50957	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SMART:SM01246
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002966A04	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G28840_001]

Coordinates

chr5:+:28835726..28841000

Molecular Weight (calculated)

63732.7 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.307

Length

561 amino acids

Sequence
(BLAST)

001: MDEKPIYHEK QRLQFCLLHA LNNLMQEKDS FRRAELDAIA EKLLADDPFR SQWTPLSLIF KPHHNVFTGN YDVNVLIAAL ESRRKRVVWH DRRNGASSIN
101: LAEESLLGIM LNIPVRRFGG VWSGRHWVSL RNINGVWYNL DSDLASPVSF EHQEEMREFL NNQEPSTEPP WLPVFPVSPD WRDQIVPASV EKNANSMELP
201: LSLRIIKRKK RWEEGWFLEA GESACCSVKR AFSTMVFMIR ELQNHTLQMR EVIYREDIQG ILARVQREMN FSFVWLFQQI FSCTPTLMVS VMLLLANFTV
301: YSMGHLDDAA MATPNPPIQS MVVMEDLGQN HEERSSIRLF SSIGKRTASI GGTGAGGGGN AKPVAGATDD GRSDDVSLSY RKIIYDGTSR APAAEEARVW
401: KGILEEVSRM NADARDAALM DRETLLRLVS PITVELAPDD YPVYLQTEIM YQQALSQDPE NALLLANFAQ FLYLVLRDHN RAEYYFKKAA GLEPADAEAL
501: SRYASFLWLA RKDLVAAEET YLEAIDADPS NSVHNANYAR FLWNTGGDGT CYPLDCNDAY Q

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.