Factsheet for Zm00001d012325_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042812_P001	Maize	plastid	91.47	90.25
EES01775	Sorghum	plastid	91.47	89.06
Os01t0855200-01	Rice	plastid	76.74	77.34
TraesCS3B01G400100.1	Wheat	plastid	68.41	73.7
TraesCS3A01G368600.1	Wheat	plastid	68.41	73.39
TraesCS3D01G361500.1	Wheat	plastid	68.22	73.33
HORVU3Hr1G084970.2	Barley	plastid	67.44	72.05
Zm00001d038274_P002	Maize	plastid	58.33	59.96
Zm00001d010075_P001	Maize	plastid	58.72	57.71
GSMUA_Achr9P03650_001	Banana	plastid	50.0	50.89
CDY02002	Canola	cytosol, mitochondrion, nucleus	14.92	50.66
GSMUA_Achr8P02280_001	Banana	plastid	47.48	49.0
GSMUA_Achr11P...	Banana	plastid	45.35	46.89
GSMUA_Achr6P33690_001	Banana	plastid	48.06	46.44
VIT_06s0004g06290.t01	Wine grape	plastid	46.71	45.56
CDY51354	Canola	plastid	41.09	43.98
Bra039995.1-P	Field mustard	plastid	41.09	43.62
Bra018368.1-P	Field mustard	plastid	39.15	43.25
KRG98335	Soybean	plastid	44.19	42.86
Solyc06g076850.2.1	Tomato	plastid	45.54	42.65
CDX97868	Canola	plastid	41.28	42.43
PGSC0003DMT400078227	Potato	plastid	45.35	42.31
Bra015570.1-P	Field mustard	plastid	41.86	42.02
AT2G29670.2	Thale cress	plastid	43.6	41.98
CDY06694	Canola	plastid	41.67	41.83
CDY10264	Canola	plastid	41.86	41.78
KRH46437	Soybean	plastid	42.44	41.71
CDY06247	Canola	plastid	39.53	41.21
Bra031567.1-P	Field mustard	plastid	39.53	41.21
CDY09927	Canola	plastid	38.18	39.8
AT1G07280.1	Thale cress	plastid	42.25	39.49
GSMUA_Achr5P28840_001	Banana	cytosol	42.44	39.04
CDX99068	Canola	plastid	32.36	36.46
Bra018168.1-P	Field mustard	plastid	32.36	36.46
Bra019495.1-P	Field mustard	plastid	32.17	35.85
CDX86126	Canola	plastid	33.53	35.6
CDY58299	Canola	plastid	32.56	34.64
CDY38075	Canola	plastid	28.29	34.43
AT3G47080.1	Thale cress	plastid	33.53	33.59
Zm00001d032535_P002	Maize	plastid	18.6	26.89
Zm00001d013919_P001	Maize	plastid	18.41	26.17
Zm00001d046530_P001	Maize	plastid	12.98	22.56
Zm00001d030086_P001	Maize	plastid	10.08	20.88
Zm00001d027613_P002	Maize	plastid	14.34	20.79
Zm00001d003035_P001	Maize	plastid	10.27	19.06

Protein Annotations

EnsemblPlants:Zm00001d012325_P001	EnsemblPlants:Zm00001d012325_T001	EnsemblPlantsGene:Zm00001d012325	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	PFscan:PS50293	ProteinID:AQK99342.1	SEG:seg	SUPFAM:SSF48452
UniParc:UPI000220B53E	UniProt:K7V795	MapMan:35.2	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr8:-:172451996..172454361

Molecular Weight (calculated)

55329.7 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.293

Length

516 amino acids

Sequence
(BLAST)

001: MGIQVAAVVT PPPCSSPSSS PASPSSSAIA TSPRHAVLGA RLARSQSSLA CWNAGLGRRR GGQHAIRRAL SASIDSVGSG GGEDEEFLRR IQELAAGQHP
101: GAGGCGWPAS VERSASSVGL PLSLRMLKRR KQQQQLEQGR WNERLIDCAG ESARAAVGRA FSSMVLIIRE LQSFTLQMRE AVVYEDLQGV LARVHAEMHA
201: SFVWLFQHIF SGTPALMVSL MLLLANFTVY SMGDSVAAAA SLVPPPQAAV EMVDIQQQPE QQQSHSQQRF DTPALKTFST GRTASVGGNG DGGGKVRPVA
301: GATGDGQSDE SSHRQNGAVV LPQDVSQSQA TPLASVSDSM AVEDAQAQQT VHDDELAIWK RISDEAARMQ ASVRAEELMD PETLEQLVAP VEAPKPDTVH
401: YSPEHVATAQ RYEQALSEEP NSSLLLANFA QFLYQVQGDL DRAEHFFKRA VRAEPADAEA LGRYAAFLWQ ARDDLAAAEE TYQEAIAADP GNAHHAAAYA
501: HFLWNTGGED TCYPLD

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.