Factsheet for GSMUA_Achr8P02280_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03650_001	Banana	plastid	71.6	70.61
GSMUA_Achr11P...	Banana	plastid	66.2	66.33
GSMUA_Achr6P33690_001	Banana	plastid	68.0	63.67
GSMUA_Achr5P28840_001	Banana	cytosol	64.4	57.4
CDY02002	Canola	cytosol, mitochondrion, nucleus	17.4	57.24
VIT_06s0004g06290.t01	Wine grape	plastid	53.0	50.09
TraesCS3B01G400100.1	Wheat	plastid	46.8	48.85
Os01t0855200-01	Rice	plastid	50.0	48.83
TraesCS3D01G361500.1	Wheat	plastid	46.6	48.54
HORVU3Hr1G084970.2	Barley	plastid	46.8	48.45
Os05t0447700-01	Rice	plastid	46.8	48.35
TraesCS3A01G368600.1	Wheat	plastid	46.4	48.23
Zm00001d012325_P001	Maize	plastid	49.0	47.48
KRG98335	Soybean	plastid	50.4	47.37
Zm00001d042812_P001	Maize	plastid	49.4	47.23
TraesCS1B01G287500.1	Wheat	plastid	45.0	46.97
TraesCS1D01G277900.1	Wheat	plastid	44.4	46.84
Bra039995.1-P	Field mustard	plastid	45.4	46.71
CDY51354	Canola	plastid	45.0	46.68
KRH46437	Soybean	plastid	48.8	46.48
EES01775	Sorghum	plastid	49.0	46.23
TraesCS1A01G278600.1	Wheat	plastid	43.4	46.17
Bra018368.1-P	Field mustard	plastid	43.0	46.04
Solyc06g076850.2.1	Tomato	plastid	50.4	45.73
Zm00001d038274_P002	Maize	plastid	45.8	45.62
KXG22120	Sorghum	plastid	46.4	45.49
CDX97868	Canola	plastid	45.4	45.22
PGSC0003DMT400078227	Potato	plastid	49.8	45.03
AT2G29670.2	Thale cress	plastid	48.0	44.78
Zm00001d010075_P001	Maize	plastid	46.6	44.38
CDY06694	Canola	plastid	45.2	43.97
Bra015570.1-P	Field mustard	plastid	45.0	43.77
Bra031567.1-P	Field mustard	plastid	42.6	43.03
CDY06247	Canola	plastid	42.6	43.03
HORVU1Hr1G073460.2	Barley	plastid	44.0	42.97
CDY10264	Canola	plastid	44.4	42.94
AT1G07280.1	Thale cress	plastid	46.4	42.03
CDY09927	Canola	plastid	41.6	42.02
CDX99068	Canola	plastid	35.2	38.43
Bra018168.1-P	Field mustard	plastid	35.2	38.43
CDX86126	Canola	plastid	35.8	36.83
Bra019495.1-P	Field mustard	plastid	33.6	36.29
AT3G47080.1	Thale cress	plastid	36.6	35.53
CDY58299	Canola	plastid	34.4	35.46
CDY38075	Canola	plastid	29.8	35.14
GSMUA_Achr2P15930_001	Banana	cytosol	7.6	31.67
GSMUA_Achr5P03500_001	Banana	plastid	12.0	24.1
GSMUA_Achr4P27320_001	Banana	plastid	12.4	23.4
GSMUA_Achr1P01000_001	Banana	plastid	12.2	22.51
GSMUA_Achr5P15660_001	Banana	plastid	11.4	19.66

Protein Annotations

EnsemblPlants:GSMUA_Achr8P02280_001	EnsemblPlants:GSMUA_Achr8T02280_001	EnsemblPlantsGene:GSMUA_Achr8G02280_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF83	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002954DB0	UniProt:M0TLY0
MapMan:35.2	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G02280_001]

Coordinates

chr8:+:1670613..1672931

Molecular Weight (calculated)

55434.5 Da

IEP (calculated)

5.288

GRAVY (calculated)

-0.333

Length

500 amino acids

Sequence
(BLAST)

001: MGVQVGGTCL QWPQLSPTNS TALSQAAFAA LVSSLGCSQR TRGCDRALAS PFLGSGTAKL LKSRSLKVRR GRGRRSVDQA LRRAFSASLD RFATGDDEEE
101: EEDEEFAPWV PVRPEPPEWP DQIVPASVEK NANSVELPLS LRIIKRKKRW EDGWLREAGE SACCSVKRAF SSMVFMIREI QSYTLQMREV IFREDLQGIL
201: SRVQREMNSS FVWLFQQVFS CTPTLMVSVM LLLANFTVFS MGHLEAAAMA APNPPTQSMV ETIVAEDHRQ THHNFSIKKF SSTGRTASIG GGGGGKAKPV
301: AGATGDGRSD DRSLSYRTIL PDGSEAVAGA EVQQEEEARL WKAILEEASK TQARDEALMD PETLRRFVSP VTVVLEPDDL ADYLRMEIMY HQALSQDPEN
401: TLLLANFAQF LYLVLHDHDR AEHYYKRAAG TEPKDAEALS RYASFLWLAR KDLVAAEETY LEAIAADPGN AVHAANYAHF LWSTGGEDTC YPLEGDGAWR

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.