CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011339.1-P	Field mustard	plastid	98.39	100.0
CDX68837	Canola	mitochondrion, plastid	92.74	92.0
AT4G32340.1	Thale cress	mitochondrion	75.81	78.99
GSMUA_Achr2P15930_001	Banana	cytosol	23.39	48.33
PGSC0003DMT400073455	Potato	plastid	36.29	37.66
Solyc06g068130.2.1	Tomato	plastid	34.68	35.83
CDX78813	Canola	mitochondrion	31.45	34.06
CDY60380	Canola	plastid	36.29	33.58
Os06t0606700-00	Rice	plastid	37.5	33.45
CDY45101	Canola	plastid	37.9	33.22
CDX92483	Canola	plastid	37.1	32.86
Solyc03g116670.2.1	Tomato	nucleus	41.13	32.38
CDY39992	Canola	nucleus	39.92	32.35
CDX88849	Canola	plastid	35.08	32.34
CDY35827	Canola	plastid	37.9	32.3
Zm00001d046530_P001	Maize	plastid	38.31	31.99
TraesCS7D01G374500.1	Wheat	mitochondrion	35.89	31.45
CDX87295	Canola	nucleus	31.85	31.23
CDY37568	Canola	nucleus	39.52	31.21
TraesCS7A01G377700.1	Wheat	mitochondrion	35.89	31.01
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	39.92	30.94
HORVU7Hr1G090280.1	Barley	mitochondrion	35.89	30.9
CDY41120	Canola	mitochondrion	37.9	30.62
TraesCS7B01G279400.1	Wheat	mitochondrion	35.89	30.38
EER88623	Sorghum	mitochondrion	38.71	30.0
CDY44501	Canola	mitochondrion	29.03	29.63
CDY08881	Canola	plastid	28.63	27.31
CDX76550	Canola	plastid	27.82	26.24
CDY02002	Canola	cytosol, mitochondrion, nucleus	15.73	25.66
CDY18241	Canola	nucleus	26.61	22.76
CDX89816	Canola	nucleus	26.61	22.68
Os04t0496700-00	Rice	nucleus	18.55	22.33
CDY59180	Canola	cytosol	14.11	19.77
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	18.95	19.11
CDY51354	Canola	plastid	23.79	12.24
CDX97868	Canola	plastid	24.6	12.15
CDY10264	Canola	plastid	23.79	11.41
CDX99068	Canola	plastid	20.97	11.35
CDY06247	Canola	plastid	22.58	11.31
CDY09927	Canola	plastid	22.58	11.31
CDY06694	Canola	plastid	23.39	11.28
CDX86126	Canola	plastid	21.37	10.91
CDY58299	Canola	plastid	20.16	10.31
CDY38075	Canola	plastid	16.94	9.91

Protein Annotations

EnsemblPlants:CDX75237	EnsemblPlantsGene:GSBRNA2T00121095001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF73	ProteinID:CDX75237	ProteinID:CDX75237.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EEF563	MapMan:35.2	:	:

Description

BnaA01g04650D

Coordinates

chrLK031804:-:247551..249396

Molecular Weight (calculated)

26738.6 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.744

Length

248 amino acids

Sequence
(BLAST)

001: MILRSASSLD LNLRAAQKSP APRCTNGARV ATTARPVSAS LRGCKSMPRA SSDGNLHEMR AVQSRTKASS IYYDDAASSK VLERSMLHQG GSNGGFGGRG
101: GDGGAGGDGG GGGGGGSVDG YYEEMIQRYP GDALLLANYA RFLKEVKGDE RKAEEYCERA MLSEDGRDGE MLSMYGDLIW KNHGDGARAQ SYFDQAVQSS
201: PDDCHVLASY ARFLWDTEEE EEEEEEGEEE SKYENGFSTY NPSVSVMS

Best Arabidopsis Sequence Match ( AT4G32340.1 )
(BLAST)

001: MIMRSASSLD LNLRAAQKPS VPRVVTTART VSAATPRVAK PITRASSDGN LYKIQSPESI TKTISVYHEE TASLRVLEGS RLPQGGSNGG FGGRGGDGAG
101: GGGGGGGGSV DGYYEEMIQR YPGDTLLLSN YARFLKEVKG DGRKAEEYCE RAMLSESGRD GELLSMYGDL IWKNHGDGVR AQSYYDQAVQ SSPDDCNVLA
201: SYARFLWDAE EEVEEEESKH HEDGFSDSTY NPSVSVVS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O49358]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.