Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g052700.2.1 | Tomato | extracellular | 92.17 | 91.35 |
| VIT_13s0067g00240.t01 | Wine grape | cytosol | 37.81 | 42.36 |
| KRH73162 | Soybean | mitochondrion | 36.91 | 34.23 |
| PGSC0003DMT400078227 | Potato | plastid | 41.83 | 33.82 |
| KRH14978 | Soybean | cytosol, plastid | 36.02 | 33.75 |
| Os08t0382600-00 | Rice | mitochondrion | 12.75 | 32.57 |
| PGSC0003DMT400073455 | Potato | plastid | 10.74 | 20.08 |
| PGSC0003DMT400001660 | Potato | mitochondrion, nucleus, plastid | 14.09 | 19.69 |
| HORVU1Hr1G073400.1 | Barley | endoplasmic reticulum | 13.42 | 18.75 |
| PGSC0003DMT400045174 | Potato | plastid | 12.08 | 17.88 |
| PGSC0003DMT400079441 | Potato | plastid | 8.95 | 17.24 |
| PGSC0003DMT400022129 | Potato | plastid | 11.86 | 14.72 |
| PGSC0003DMT400003940 | Potato | nucleus | 9.84 | 10.95 |
| PGSC0003DMT400035002 | Potato | plastid | 13.42 | 8.47 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069757 | EnsemblPlantsGene:PGSC0003DMG400027128 | EntrezGene:102586406 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 |
| PANTHER:PTHR26312:SF87 | PFscan:PS50293 | PGSC:PGSC0003DMG400027128 | RefSeq:XP_006355663.1 | SEG:seg | SUPFAM:SSF48452 |
| UniParc:UPI0002950E71 | UniProt:M1CL32 | MapMan:35.2 | : | : | : |
Description
Binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027128]
Coordinates
chr5:+:47980608..47984023
Molecular Weight (calculated)
51358.9 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.434
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQNSLLLQ SSSPSTLSFL YSSPKSNKWG HKNPNFICKL VLFSPKKLRS QYFEKNDSKG HSSIQPCCCS SRFGEEQFDG EGIERGENEG SCAIFGSKDS
101: IFPSKFESLE PSLLGIEPEP PYWPEREVIS WAHIEQKAKS FGLPLSLRMM QKKYQWESGR FKDLKATNSC TSKAFNSMVF IIVELQTYAL HMRESMCNED
201: LEMIIDKVQG DMYASFVCLF RQVFSQTPML MMYVMILLAN FSVHSASGEN CDQTYLKVHY PDIVPQDESK VVWSDEEKEL WDSIQDETLN MRGLKGIGFD
301: HEVMSKFVSP LSVEIEPDNS VDYYKADLVY QMNLTHEPNN TLLLCNYAHF LKVFVRDNNR AEECFKRAVQ VEPPDAEALC QYAIFLWKVK NDLWGAEERY
401: QQAVAAEPRN SYYRCTYANF LWSTGGEETC FLPSSTSPIN NKKGEEV
101: IFPSKFESLE PSLLGIEPEP PYWPEREVIS WAHIEQKAKS FGLPLSLRMM QKKYQWESGR FKDLKATNSC TSKAFNSMVF IIVELQTYAL HMRESMCNED
201: LEMIIDKVQG DMYASFVCLF RQVFSQTPML MMYVMILLAN FSVHSASGEN CDQTYLKVHY PDIVPQDESK VVWSDEEKEL WDSIQDETLN MRGLKGIGFD
301: HEVMSKFVSP LSVEIEPDNS VDYYKADLVY QMNLTHEPNN TLLLCNYAHF LKVFVRDNNR AEECFKRAVQ VEPPDAEALC QYAIFLWKVK NDLWGAEERY
401: QQAVAAEPRN SYYRCTYANF LWSTGGEETC FLPSSTSPIN NKKGEEV
001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.