Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010280.1-P | Field mustard | plastid | 88.33 | 86.89 |
| CDY23248 | Canola | plastid | 87.22 | 86.26 |
| CDY55614 | Canola | plastid | 80.56 | 83.81 |
| AT2G24020.1 | Thale cress | plastid | 76.67 | 75.82 |
| Solyc12g009980.1.1 | Tomato | plastid | 65.0 | 63.59 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 65.0 | 63.59 |
| EES04638 | Sorghum | plastid | 63.89 | 62.16 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 67.22 | 61.73 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 63.33 | 61.62 |
| KRH55034 | Soybean | plastid | 66.11 | 61.03 |
| KRH26162 | Soybean | plastid | 66.11 | 60.71 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 64.44 | 60.42 |
| TraesCS6D01G137000.1 | Wheat | plastid | 62.78 | 60.11 |
| TraesCS6A01G147700.1 | Wheat | plastid | 62.22 | 59.57 |
| TraesCS6B01G175800.1 | Wheat | plastid | 61.67 | 59.04 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 68.89 | 54.39 |
| Zm00001d053743_P002 | Maize | plastid | 65.0 | 52.94 |
| Zm00001d015505_P001 | Maize | plastid | 62.22 | 37.84 |
Protein Annotations
| MapMan:23.1.7.2 | Gene3D:3.30.1310.10 | EntrezGene:829185 | UniProt:A0A178UV77 | ProteinID:AEE85787.1 | ArrayExpress:AT4G30620 |
| EnsemblPlantsGene:AT4G30620 | RefSeq:AT4G30620 | TAIR:AT4G30620 | RefSeq:AT4G30620-TAIR-G | EnsemblPlants:AT4G30620.1 | TAIR:AT4G30620.1 |
| EMBL:AY074869 | EMBL:AY085741 | EMBL:AY327123 | Unigene:At.31819 | EMBL:BT020301 | EMBL:BT025534 |
| ProteinID:CAB79780.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009941 | InterPro:IPR036894 | RefSeq:NP_194791.1 | ProteinID:OAO97523.1 | PFAM:PF02575 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR33449 |
| PANTHER:PTHR33449:SF3 | UniProt:Q9M098 | SUPFAM:SSF82607 | UniParc:UPI00000A6728 | InterPro:YbaB-like_sf | InterPro:YbaB/EbfC |
Description
Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
Coordinates
chr4:-:14948586..14950072
Molecular Weight (calculated)
19584.4 Da
IEP (calculated)
9.739
GRAVY (calculated)
-0.478
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.