Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26162 | Soybean | plastid | 72.96 | 72.96 |
| KRH55034 | Soybean | plastid | 70.41 | 70.77 |
| Solyc12g009980.1.1 | Tomato | plastid | 64.8 | 69.02 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 64.8 | 69.02 |
| AT2G24020.1 | Thale cress | plastid | 63.27 | 68.13 |
| AT4G30620.1 | Thale cress | plastid | 61.73 | 67.22 |
| CDY55614 | Canola | plastid | 59.18 | 67.05 |
| CDY23248 | Canola | plastid | 62.24 | 67.03 |
| Bra010280.1-P | Field mustard | plastid | 62.24 | 66.67 |
| Bra039224.1-P | Field mustard | plastid | 61.73 | 66.12 |
| CDX76844 | Canola | plastid | 61.73 | 66.12 |
| CDY34804 | Canola | plastid | 61.73 | 66.12 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 64.29 | 65.62 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 61.22 | 64.86 |
| EES04638 | Sorghum | plastid | 60.71 | 64.32 |
| TraesCS6A01G147700.1 | Wheat | plastid | 60.71 | 63.3 |
| TraesCS6D01G137000.1 | Wheat | plastid | 60.2 | 62.77 |
| TraesCS6B01G175800.1 | Wheat | plastid | 59.18 | 61.7 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 65.31 | 56.14 |
| Zm00001d053743_P002 | Maize | plastid | 61.73 | 54.75 |
| Zm00001d015505_P001 | Maize | plastid | 60.71 | 40.2 |
| CDY45942 | Canola | nucleus | 35.71 | 26.82 |
| Bra008272.1-P | Field mustard | nucleus | 35.71 | 26.82 |
| CDY20394 | Canola | nucleus | 35.2 | 26.24 |
Protein Annotations
| EntrezGene:100243229 | wikigene:100243229 | MapMan:23.1.7.2 | Gene3D:3.30.1310.10 | EMBL:AM424203 | ProteinID:CAN79971 |
| ProteinID:CAN79971.1 | ProteinID:CBI36539 | ProteinID:CBI36539.3 | ncoils:Coil | UniProt:D7U1C3 | EMBL:FN596499 |
| InterPro:IPR036894 | EntrezGene:LOC100243229 | wikigene:LOC100243229 | PFAM:PF02575 | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 |
| SUPFAM:SSF82607 | TIGR:TC52280 | UniParc:UPI00019844A3 | ArrayExpress:VIT_11s0037g00330 | EnsemblPlantsGene:VIT_11s0037g00330 | EnsemblPlants:VIT_11s0037g00330.t01 |
| unigene:Vvi.12767 | RefSeq:XP_002277907 | RefSeq:XP_002277907.1 | InterPro:YbaB-like_sf | InterPro:YbaB/EbfC | SEG:seg |
Description
No Description!
Coordinates
chr11:-:8132258..8141735
Molecular Weight (calculated)
21532.7 Da
IEP (calculated)
7.091
GRAVY (calculated)
-0.445
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTSALTTQ ISNLCGFTDC KNTTSSSLFF CKLSPNTNLV STRMFCQYAD SRMGNNRRSV RVYGLFGGNK ENSEKGDDAR SKAGFLGNMQ NLYETVKKAQ
101: MVVQVEAVKV QKELAEAEFD GYCEGELIKV TLSGNQQPVR TEITEAAMEL GPEKLSLLVT EAYKDAHQKS VQAMKERMND LAQSLGMPQG LSEGLK
101: MVVQVEAVKV QKELAEAEFD GYCEGELIKV TLSGNQQPVR TEITEAAMEL GPEKLSLLVT EAYKDAHQKS VQAMKERMND LAQSLGMPQG LSEGLK
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Arabidopsis Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.