Factsheet for VIT_08s0040g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01650.t01
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73790.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT1G73790.1	VIT_02s0025g01650.t01	AT4G10930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g05660.t01	Wine grape	cytosol	57.01	83.56
CDY11089	Canola	cytosol	49.53	82.81
KRH75670	Soybean	cytosol	55.14	79.73
KRH65887	Soybean	cytosol	54.21	79.45
Bra015965.1-P	Field mustard	cytosol	50.47	78.26
CDX73014	Canola	cytosol	50.47	78.26
CDY60144	Canola	cytosol	50.47	78.26
Bra003829.1-P	Field mustard	cytosol	49.53	77.94
CDX68212	Canola	cytosol	49.53	77.94
AT4G09550.2	Thale cress	cytosol	49.53	74.65
PGSC0003DMT400068084	Potato	cytosol	52.34	73.68
AT1G73790.1	Thale cress	cytosol	45.79	73.13
Solyc03g097400.1.1	Tomato	endoplasmic reticulum	38.32	70.69
KRH66740	Soybean	cytosol	28.97	65.96
TraesCS5B01G500000.1	Wheat	cytosol	39.25	45.16
TraesCS1D01G245500.1	Wheat	cytosol	39.25	45.16
TraesCS5D01G500200.1	Wheat	cytosol	39.25	44.21
TraesCS1A01G246000.1	Wheat	cytosol	39.25	44.21
HORVU5Hr1G114640.1	Barley	cytosol	39.25	43.75
Zm00001d012933_P001	Maize	cytosol	39.25	43.75
EER90611	Sorghum	cytosol	38.32	43.16
Os03t0824000-01	Rice	cytosol	38.32	43.16
Zm00001d034680_P001	Maize	cytosol	38.32	42.71
Os11t0368172-01	Rice	cytosol	39.25	42.42
Os03t0435900-01	Rice	cytosol	39.25	42.42
HORVU5Hr1G114660.1	Barley	peroxisome	38.32	30.6
Os11t0362633-00	Rice	cytosol	27.1	22.14
Os03t0435800-00	Rice	cytosol	27.1	22.14

Protein Annotations

EntrezGene:100249857	wikigene:100249857	MapMan:13.3.3.1.1	MapMan:20.1.2.2.10	ProteinID:CBI32803	ProteinID:CBI32803.3
UniProt:D7TQT3	EMBL:FN596008	GO:GO:0000923	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0007049
GO:GO:0008150	GO:GO:0008274	GO:GO:0009987	GO:GO:0016043	GO:GO:0031021	GO:GO:0033566
GO:GO:0043015	GO:GO:0051415	GO:GO:0090307	EntrezGene:LOC100249857	wikigene:LOC100249857	InterPro:MZT1
PFAM:PF12554	PANTHER:PTHR28520	PANTHER:PTHR28520:SF5	UniParc:UPI0001BE3F94	ArrayExpress:VIT_08s0040g01030	EnsemblPlantsGene:VIT_08s0040g01030
EnsemblPlants:VIT_08s0040g01030.t01	RefSeq:XP_002283004	RefSeq:XP_002283004.1	:	:	:

Description

No Description!

Coordinates

chr8:-:12058940..12059804

Molecular Weight (calculated)

12144.6 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.131

Length

107 amino acids

Sequence
(BLAST)

001: MEYTFKQRHF LLSLLRLVDW TKFFKNRNPF QSICMDPEAA QTARESLELA FHMSNILDTG LDRHTLSVLI TLCDLGLNPE ALAAVVKELR RESCSSSPMP
101: ETPSSVS

Best Arabidopsis Sequence Match ( AT4G09550.1 )
(BLAST)

1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H

Arabidopsis Description

GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.