Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73790.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDY25761 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDX90783 | AT4G10930.1 | 21798944 |
| AT1G73790.1 | CDY05126 | AT4G10930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015965.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX73014 | Canola | cytosol | 97.1 | 97.1 |
| CDY11089 | Canola | cytosol | 81.16 | 87.5 |
| CDX68212 | Canola | cytosol | 81.16 | 82.35 |
| AT1G73790.1 | Thale cress | cytosol | 71.01 | 73.13 |
| KRH75670 | Soybean | cytosol | 78.26 | 72.97 |
| KRH65887 | Soybean | cytosol | 76.81 | 72.6 |
| AT4G09550.2 | Thale cress | cytosol | 72.46 | 70.42 |
| PGSC0003DMT400068084 | Potato | cytosol | 75.36 | 68.42 |
| VIT_10s0003g05660.t01 | Wine grape | cytosol | 71.01 | 67.12 |
| Solyc03g097400.1.1 | Tomato | endoplasmic reticulum | 55.07 | 65.52 |
| KRH66740 | Soybean | cytosol | 39.13 | 57.45 |
| VIT_08s0040g01030.t01 | Wine grape | extracellular | 78.26 | 50.47 |
| TraesCS5B01G500000.1 | Wheat | cytosol | 56.52 | 41.94 |
| TraesCS1D01G245500.1 | Wheat | cytosol | 56.52 | 41.94 |
| Zm00001d012933_P001 | Maize | cytosol | 57.97 | 41.67 |
| Zm00001d034680_P001 | Maize | cytosol | 57.97 | 41.67 |
| TraesCS1A01G246000.1 | Wheat | cytosol | 56.52 | 41.05 |
| Os03t0824000-01 | Rice | cytosol | 56.52 | 41.05 |
| TraesCS5D01G500200.1 | Wheat | cytosol | 56.52 | 41.05 |
| EER90611 | Sorghum | cytosol | 56.52 | 41.05 |
| HORVU5Hr1G114640.1 | Barley | cytosol | 56.52 | 40.62 |
| Os11t0368172-01 | Rice | cytosol | 56.52 | 39.39 |
| Os03t0435900-01 | Rice | cytosol | 56.52 | 39.39 |
| HORVU5Hr1G114660.1 | Barley | peroxisome | 55.07 | 28.36 |
| Os11t0362633-00 | Rice | cytosol | 40.58 | 21.37 |
| Os03t0435800-00 | Rice | cytosol | 40.58 | 21.37 |
Protein Annotations
| MapMan:13.3.3.1.1 | MapMan:20.1.2.2.10 | UniProt:A0A078J8L8 | EnsemblPlants:CDY60144 | ProteinID:CDY60144 | ProteinID:CDY60144.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 |
| GO:GO:0008274 | GO:GO:0033566 | EnsemblPlantsGene:GSBRNA2T00028235001 | InterPro:MZT1 | PFAM:PF12554 | PANTHER:PTHR28520 |
| PANTHER:PTHR28520:SF5 | UniParc:UPI0002541D9B | : | : | : | : |
Description
BnaA07g39080DBnaA07g39080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8L8]
Coordinates
chrLK033847:+:42432..43084
Molecular Weight (calculated)
7451.8 Da
IEP (calculated)
4.478
GRAVY (calculated)
-0.171
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKEAAETAR DSLELAFRMS NILETGLDRH TLSVLIALCD LGLNPEALAA VVKELRQESG NNHGNSSLT
1: MNQEAAETAR ESLELVFRMS NILETGLDRH TLSVLIALCD IGLNPEALAT LVKELRRDSA TTTTTVD
Arabidopsis Description
GIP2Mitotic-spindle organizing protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9C9T3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.