CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH38611
KRH41328
KRH52586
KRH60053
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73790.1	KRH52586	AT1G22920.1	21798944
AT1G73790.1	KRH61926	AT1G22920.1	21798944
AT1G73790.1	KRH38611	AT4G10930.1	21798944
AT1G73790.1	KRH41328	AT4G10930.1	21798944
AT1G73790.1	KRH60053	AT4G10930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75670	Soybean	cytosol	98.63	97.3
CDY11089	Canola	cytosol	72.6	82.81
KRH66740	Soybean	cytosol	50.68	78.72
Bra003829.1-P	Field mustard	cytosol	72.6	77.94
CDX68212	Canola	cytosol	72.6	77.94
Bra015965.1-P	Field mustard	cytosol	72.6	76.81
CDX73014	Canola	cytosol	72.6	76.81
CDY60144	Canola	cytosol	72.6	76.81
AT4G09550.2	Thale cress	cytosol	72.6	74.65
VIT_10s0003g05660.t01	Wine grape	cytosol	73.97	73.97
PGSC0003DMT400068084	Potato	cytosol	75.34	72.37
Solyc03g097400.1.1	Tomato	endoplasmic reticulum	54.79	68.97
AT1G73790.1	Thale cress	cytosol	61.64	67.16
VIT_08s0040g01030.t01	Wine grape	extracellular	79.45	54.21
TraesCS1A01G246000.1	Wheat	cytosol	61.64	47.37
TraesCS1D01G245500.1	Wheat	cytosol	60.27	47.31
TraesCS5B01G500000.1	Wheat	cytosol	60.27	47.31
TraesCS5D01G500200.1	Wheat	cytosol	60.27	46.32
HORVU5Hr1G114640.1	Barley	cytosol	60.27	45.83
Zm00001d012933_P001	Maize	cytosol	58.9	44.79
EER90611	Sorghum	cytosol	57.53	44.21
Os03t0824000-01	Rice	cytosol	57.53	44.21
Zm00001d034680_P001	Maize	cytosol	57.53	43.75
Os11t0368172-01	Rice	cytosol	57.53	42.42
Os03t0435900-01	Rice	cytosol	57.53	42.42
HORVU5Hr1G114660.1	Barley	peroxisome	56.16	30.6
Os11t0362633-00	Rice	cytosol	41.1	22.9
Os03t0435800-00	Rice	cytosol	41.1	22.9

Protein Annotations

EntrezGene:100527900	MapMan:13.3.3.1.1	MapMan:20.1.2.2.10	EMBL:ACUP02001722	EMBL:BT092792	UniProt:C6T5S8
EnsemblPlantsGene:GLYMA_03G068900	GO:GO:0000923	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0007049	GO:GO:0008150
GO:GO:0008274	GO:GO:0009987	GO:GO:0016043	GO:GO:0031021	GO:GO:0033566	GO:GO:0043015
GO:GO:0051415	GO:GO:0090307	EnsemblPlants:KRH65887	ProteinID:KRH65887	ProteinID:KRH65887.1	ProteinID:KRH65888.1
ProteinID:KRH65889.1	InterPro:MZT1	PFAM:PF12554	PANTHER:PTHR28520	PANTHER:PTHR28520:SF5	UniParc:UPI0001B15EF0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:14375210..14377147

Molecular Weight (calculated)

7793.4 Da

IEP (calculated)

4.957

GRAVY (calculated)

0.105

Length

73 amino acids

Sequence
(BLAST)

1: MDPEAARTAR ESLDLAFHMS NILDTGLDRH TLSVLIALCD LGVNPEALAA VVKELRKEKP SLSSSLPVAP SLP

Best Arabidopsis Sequence Match ( AT4G09550.1 )
(BLAST)

1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H

Arabidopsis Description

GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.