CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH38611
KRH41328
KRH52586
KRH60053
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73790.1	KRH52586	AT1G22920.1	21798944
AT1G73790.1	KRH61926	AT1G22920.1	21798944
AT1G73790.1	KRH38611	AT4G10930.1	21798944
AT1G73790.1	KRH41328	AT4G10930.1	21798944
AT1G73790.1	KRH60053	AT4G10930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65887	Soybean	cytosol	97.3	98.63
CDY11089	Canola	cytosol	71.62	82.81
KRH66740	Soybean	cytosol	51.35	80.85
Bra015965.1-P	Field mustard	cytosol	72.97	78.26
CDX73014	Canola	cytosol	72.97	78.26
CDY60144	Canola	cytosol	72.97	78.26
Bra003829.1-P	Field mustard	cytosol	71.62	77.94
CDX68212	Canola	cytosol	71.62	77.94
AT4G09550.2	Thale cress	cytosol	72.97	76.06
VIT_10s0003g05660.t01	Wine grape	cytosol	74.32	75.34
PGSC0003DMT400068084	Potato	cytosol	74.32	72.37
Solyc03g097400.1.1	Tomato	endoplasmic reticulum	54.05	68.97
AT1G73790.1	Thale cress	cytosol	60.81	67.16
VIT_08s0040g01030.t01	Wine grape	extracellular	79.73	55.14
TraesCS1A01G246000.1	Wheat	cytosol	60.81	47.37
TraesCS1D01G245500.1	Wheat	cytosol	59.46	47.31
TraesCS5B01G500000.1	Wheat	cytosol	59.46	47.31
TraesCS5D01G500200.1	Wheat	cytosol	59.46	46.32
HORVU5Hr1G114640.1	Barley	cytosol	59.46	45.83
Zm00001d012933_P001	Maize	cytosol	58.11	44.79
EER90611	Sorghum	cytosol	56.76	44.21
Os03t0824000-01	Rice	cytosol	56.76	44.21
Zm00001d034680_P001	Maize	cytosol	56.76	43.75
Os11t0368172-01	Rice	cytosol	56.76	42.42
Os03t0435900-01	Rice	cytosol	56.76	42.42
HORVU5Hr1G114660.1	Barley	peroxisome	55.41	30.6
Os11t0362633-00	Rice	cytosol	41.89	23.66
Os03t0435800-00	Rice	cytosol	41.89	23.66

Protein Annotations

EntrezGene:100799119	MapMan:13.3.3.1.1	MapMan:20.1.2.2.10	EMBL:ACUP02000444	EnsemblPlantsGene:GLYMA_01G100100	GO:GO:0000923
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0007049	GO:GO:0008150	GO:GO:0008274	GO:GO:0009987
GO:GO:0016043	GO:GO:0031021	GO:GO:0033566	GO:GO:0043015	GO:GO:0051415	GO:GO:0090307
UniProt:I1J6X9	EnsemblPlants:KRH75670	ProteinID:KRH75670	ProteinID:KRH75670.1	ProteinID:KRH75671.1	InterPro:MZT1
PFAM:PF12554	PANTHER:PTHR28520	PANTHER:PTHR28520:SF5	UniParc:UPI00023372D4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:33329597..33332265

Molecular Weight (calculated)

7852.5 Da

IEP (calculated)

4.957

GRAVY (calculated)

0.061

Length

74 amino acids

Sequence
(BLAST)

1: MDPEAARTAR ESLDLAFHMS NILDTGLDRH TLSVLIALCD LGVNPEALAA VVKELRKEKP SLSSSLPAAP SSLP

Best Arabidopsis Sequence Match ( AT4G09550.1 )
(BLAST)

1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H

Arabidopsis Description

GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.