Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73790.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDY25761 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDX90783 | AT4G10930.1 | 21798944 |
| AT1G73790.1 | CDY05126 | AT4G10930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68212 | Canola | cytosol | 98.44 | 92.65 |
| CDX73014 | Canola | cytosol | 87.5 | 81.16 |
| CDY60144 | Canola | cytosol | 87.5 | 81.16 |
| AT1G73790.1 | Thale cress | cytosol | 81.25 | 77.61 |
| AT4G09550.2 | Thale cress | cytosol | 82.81 | 74.65 |
| KRH65887 | Soybean | cytosol | 82.81 | 72.6 |
| KRH75670 | Soybean | cytosol | 82.81 | 71.62 |
| PGSC0003DMT400068084 | Potato | cytosol | 81.25 | 68.42 |
| VIT_10s0003g05660.t01 | Wine grape | cytosol | 75.0 | 65.75 |
| Solyc03g097400.1.1 | Tomato | endoplasmic reticulum | 59.38 | 65.52 |
| KRH66740 | Soybean | cytosol | 40.62 | 55.32 |
| VIT_08s0040g01030.t01 | Wine grape | extracellular | 82.81 | 49.53 |
| TraesCS5B01G500000.1 | Wheat | cytosol | 62.5 | 43.01 |
| TraesCS1D01G245500.1 | Wheat | cytosol | 62.5 | 43.01 |
| TraesCS5D01G500200.1 | Wheat | cytosol | 62.5 | 42.11 |
| Os03t0824000-01 | Rice | cytosol | 62.5 | 42.11 |
| TraesCS1A01G246000.1 | Wheat | cytosol | 62.5 | 42.11 |
| EER90611 | Sorghum | cytosol | 62.5 | 42.11 |
| HORVU5Hr1G114640.1 | Barley | cytosol | 62.5 | 41.67 |
| Zm00001d012933_P001 | Maize | cytosol | 62.5 | 41.67 |
| Zm00001d034680_P001 | Maize | cytosol | 60.94 | 40.62 |
| Os11t0368172-01 | Rice | cytosol | 62.5 | 40.4 |
| Os03t0435900-01 | Rice | cytosol | 62.5 | 40.4 |
| HORVU5Hr1G114660.1 | Barley | peroxisome | 60.94 | 29.1 |
| Os11t0362633-00 | Rice | cytosol | 45.31 | 22.14 |
| Os03t0435800-00 | Rice | cytosol | 45.31 | 22.14 |
Protein Annotations
| EnsemblPlants:CDY11089 | EnsemblPlantsGene:GSBRNA2T00049055001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0008274 | GO:GO:0033566 | InterPro:MZT1 | PANTHER:PTHR28520 |
| PANTHER:PTHR28520:SF5 | PFAM:PF12554 | ProteinID:CDY11089 | ProteinID:CDY11089.1 | UniParc:UPI0004EE3297 | UniProt:A0A078FDT1 |
| MapMan:13.3.3.1.1 | MapMan:20.1.2.2.10 | : | : | : | : |
Description
BnaC06g23410DBnaC06g23410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDT1]
Coordinates
chrLK032009:-:207936..208321
Molecular Weight (calculated)
7067.5 Da
IEP (calculated)
4.480
GRAVY (calculated)
-0.037
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MDQEAAETAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGLNPEALAA VVKELRQESG RSLR
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
Arabidopsis Description
GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.