Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G245500.1 | Wheat | cytosol | 94.74 | 96.77 |
| TraesCS5B01G500000.1 | Wheat | cytosol | 90.53 | 92.47 |
| HORVU5Hr1G114640.1 | Barley | cytosol | 87.37 | 86.46 |
| Zm00001d034680_P001 | Maize | cytosol | 73.68 | 72.92 |
| EER90611 | Sorghum | cytosol | 70.53 | 70.53 |
| Zm00001d012933_P001 | Maize | cytosol | 68.42 | 67.71 |
| CDY11089 | Canola | cytosol | 42.11 | 62.5 |
| KRH65887 | Soybean | cytosol | 47.37 | 61.64 |
| KRH75670 | Soybean | cytosol | 47.37 | 60.81 |
| AT4G09550.2 | Thale cress | cytosol | 44.21 | 59.15 |
| CDX68212 | Canola | cytosol | 42.11 | 58.82 |
| Bra003829.1-P | Field mustard | cytosol | 42.11 | 58.82 |
| AT1G73790.1 | Thale cress | cytosol | 41.05 | 58.21 |
| CDY60144 | Canola | cytosol | 41.05 | 56.52 |
| CDX73014 | Canola | cytosol | 41.05 | 56.52 |
| Bra015965.1-P | Field mustard | cytosol | 41.05 | 56.52 |
| Solyc03g097400.1.1 | Tomato | endoplasmic reticulum | 32.63 | 53.45 |
| PGSC0003DMT400068084 | Potato | cytosol | 42.11 | 52.63 |
| KRH66740 | Soybean | cytosol | 25.26 | 51.06 |
| VIT_10s0003g05660.t01 | Wine grape | cytosol | 38.95 | 50.68 |
| HORVU5Hr1G114660.1 | Barley | peroxisome | 64.21 | 45.52 |
| VIT_08s0040g01030.t01 | Wine grape | extracellular | 44.21 | 39.25 |
| Os03t0435800-00 | Rice | cytosol | 40.0 | 29.01 |
| Os11t0362633-00 | Rice | cytosol | 40.0 | 29.01 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G246000.1 | EnsemblPlantsGene:TraesCS1A01G246000 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0008274 | GO:GO:0033566 | InterPro:MZT1 | PANTHER:PTHR28520 |
| PFAM:PF12554 | SEG:seg | MapMan:13.3.3.1.1 | MapMan:20.1.2.2.10 | : | : |
Description
No Description!
Coordinates
chr1A:+:435376146..435376433
Molecular Weight (calculated)
9710.5 Da
IEP (calculated)
4.605
GRAVY (calculated)
0.003
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MGTEESAGGA ARQAKESLEL AFQMSQILDT GLDRHTLSLL MALCDRGTNP EALAALVREL SSTAPPSASA PTAPASNAVA APTAPSLFPS GFRQL
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
Arabidopsis Description
GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.