Factsheet for VIT_10s0003g05660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01650.t01
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73790.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT1G73790.1	VIT_02s0025g01650.t01	AT4G10930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11089	Canola	cytosol	65.75	75.0
KRH75670	Soybean	cytosol	75.34	74.32
KRH65887	Soybean	cytosol	73.97	73.97
Bra015965.1-P	Field mustard	cytosol	67.12	71.01
CDX73014	Canola	cytosol	67.12	71.01
CDY60144	Canola	cytosol	67.12	71.01
Bra003829.1-P	Field mustard	cytosol	65.75	70.59
CDX68212	Canola	cytosol	65.75	70.59
AT4G09550.2	Thale cress	cytosol	68.49	70.42
AT1G73790.1	Thale cress	cytosol	61.64	67.16
PGSC0003DMT400068084	Potato	cytosol	65.75	63.16
Solyc03g097400.1.1	Tomato	endoplasmic reticulum	49.32	62.07
KRH66740	Soybean	cytosol	36.99	57.45
VIT_08s0040g01030.t01	Wine grape	extracellular	83.56	57.01
TraesCS5B01G500000.1	Wheat	cytosol	50.68	39.78
TraesCS1D01G245500.1	Wheat	cytosol	50.68	39.78
Zm00001d034680_P001	Maize	cytosol	52.05	39.58
TraesCS1A01G246000.1	Wheat	cytosol	50.68	38.95
TraesCS5D01G500200.1	Wheat	cytosol	50.68	38.95
HORVU5Hr1G114640.1	Barley	cytosol	50.68	38.54
Os03t0824000-01	Rice	cytosol	49.32	37.89
EER90611	Sorghum	cytosol	49.32	37.89
Zm00001d012933_P001	Maize	cytosol	49.32	37.5
Os11t0368172-01	Rice	cytosol	50.68	37.37
Os03t0435900-01	Rice	cytosol	50.68	37.37
HORVU5Hr1G114660.1	Barley	peroxisome	47.95	26.12
Os11t0362633-00	Rice	cytosol	32.88	18.32
Os03t0435800-00	Rice	cytosol	32.88	18.32

Protein Annotations

EntrezGene:100254269	wikigene:100254269	MapMan:13.3.3.1.1	MapMan:20.1.2.2.10	EMBL:AM455270	ProteinID:CAN72259
ProteinID:CAN72259.1	ProteinID:CBI31082	ProteinID:CBI31082.3	UniProt:D7TKR0	EMBL:FN595992	GO:GO:0000923
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0007049	GO:GO:0008150	GO:GO:0008274	GO:GO:0009987
GO:GO:0016043	GO:GO:0031021	GO:GO:0033566	GO:GO:0043015	GO:GO:0051415	GO:GO:0090307
EntrezGene:LOC100254269	wikigene:LOC100254269	InterPro:MZT1	PFAM:PF12554	PANTHER:PTHR28520	PANTHER:PTHR28520:SF5
UniParc:UPI0001984237	ArrayExpress:VIT_10s0003g05660	EnsemblPlantsGene:VIT_10s0003g05660	EnsemblPlants:VIT_10s0003g05660.t01	unigene:Vvi.19374	RefSeq:XP_002270835
RefSeq:XP_002270835.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:10522532..10522985

Molecular Weight (calculated)

7912.4 Da

IEP (calculated)

4.300

GRAVY (calculated)

-0.042

Length

73 amino acids

Sequence
(BLAST)

1: MDPEASQTAR EALDLTFHMS NILETGLDRH TVSVLVALCD LGLNPEALAA VVKELRREPF SSFPMPETPS SAS

Best Arabidopsis Sequence Match ( AT4G09550.1 )
(BLAST)

1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H

Arabidopsis Description

GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.