Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0039g01880.t01 | |
| VIT_18s0001g14860.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10930.1 | VIT_16s0039g01880.t01 | AT3G03000.1 | 21798944 |
| AT4G10930.1 | VIT_18s0001g14860.t01 | AT5G42190.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38611 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 7.41 | 77.87 |
| KRH41328 | Soybean | nucleus | 45.87 | 45.44 |
| KRH60053 | Soybean | nucleus | 46.02 | 45.14 |
| Solyc12g055910.1.1 | Tomato | nucleus | 42.28 | 44.28 |
| AT4G10930.1 | Thale cress | nucleus | 37.68 | 40.83 |
| CDX90783 | Canola | nucleus | 36.51 | 40.8 |
| CDY05126 | Canola | nucleus | 36.12 | 40.61 |
| Bra000729.1-P | Field mustard | nucleus | 36.51 | 39.53 |
| GSMUA_Achr3P31620_001 | Banana | nucleus | 34.24 | 32.96 |
| OQU84317 | Sorghum | nucleus | 30.73 | 31.47 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 30.66 | 30.68 |
| Os12t0209700-01 | Rice | nucleus | 13.34 | 30.43 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 31.05 | 30.4 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 30.89 | 29.98 |
| Zm00001d053989_P003 | Maize | plastid | 29.49 | 28.81 |
| VIT_17s0000g04770.t01 | Wine grape | nucleus | 6.47 | 12.81 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 6.47 | 11.32 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CCB58253 | ProteinID:CCB58253.1 | UniProt:F6HU30 | EMBL:FN596251 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF76 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI00021093CF |
| ArrayExpress:VIT_02s0025g01650 | EnsemblPlantsGene:VIT_02s0025g01650 | EnsemblPlants:VIT_02s0025g01650.t01 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | : | : | : |
Description
No Description!
Coordinates
chr2:+:1585840..1594580
Molecular Weight (calculated)
140956.0 Da
IEP (calculated)
4.879
GRAVY (calculated)
-0.701
Length
1282 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEVEVFTNDM AEDDSYEVDE DIDASGLEGE KCGICMDIII DRGVLDCCQH WFCFACIDNW ATITNLCPLC QTEFQLITCV PVYDTIGTSK VDEDSFPRDD
0101: DWSIEGKNNT LSFPSYYIDE NAVICLDGDG CKIRSGSATI TEDSNLDTSI ACDSCDIWYH AFCVGFDPEG TSEDSWLCPR CAVAGMPGKS VVSGLGDGNS
0201: ECLLEDGFSR KLSVSVADAG ETALVVSMVE GNQWMEESSE DFLSNLEDCN DWKFESYLIS DANCLESPTP SAERDNMQPN LEAQELELSL SRDTSFSLPS
0301: NSSVLNDLKT NSANKIVNEP SGFDGLRISS TKLLDGSCSE NKPSESESSI GLHLGLSVGS FLSVESTKDR GTDDENTKDT GTDEVVAADV HQQHPSEESP
0401: LSGMEMGGPR HAGNGKVKAE IGTEVSAKKV RAEGKIQMAP IEKQANGQHV SVDAQKGHST VEVSTGDELR HNRKRKEVTS DIMSIVQGTD RRPLKGLAEK
0501: SDGERENATG LRVKKIMKRA SEDKESAVLV QKLRKEIREA VRSKSSIELG TNLFDPKLLT AFRAAIAGPI TETTARKLSP SALKVKKSML QKGKIRENLT
0601: KKIYATSKGK RRRAWDRDLE VEFWKHRCMR ATKPEKIETL KSVLDLLRTS ECIDPEQGSE SQTTNPILSR LYLADTSVFP RKDDIKPLAA LKASGNPEQN
0701: KEHASMEKVS KPALHSPAVK APETCKIPSK VGFSPYDHKG NKSNASSLKD ATAHGKPHPG KRPEGSSIPL SVASKVNSQK EAGVKSDDIK TDKRKWALEV
0801: LARKNAAASK NTTQEKQEDN ALLKGNYPLL TQLPRDMRPV LAPSQHNKIP ASVRQTQLYR LTEHFLRKAN LPVIRRTAET ELAVADAVNI EREVANRSNS
0901: KLVYVNLCSQ ELLHRSDGSK SSRALESDSD CSKSSRAIES DPLPPAESTD RSEPTTNELS TDPEIEEALR TAGLLSDSPP NSPLQEIKDL NDEDDPSKDN
1001: REEGPDNVFE MDSHLELDIY GDFEYDLEDE EYIGATALKA SKVQEEGESK MKVVFSTLNS DRSNDVLNLE EHVKVGIAEA PKNSPSSLKH HTDTCIRSST
1101: MEGGTDHSCL PPESFLGEGG KEPSLEECEE LYGPDKEPLI QRFPEKATEL YGLFHTEALA KNTVPGKNEN YGEDQAVKGG ENSPNPSQTG ENGRKEKSNT
1201: DTNKQTDSSS SVHGKVEAYI KEHIRPLCKS GVITVEQYRW AVGKTTEKVM KYHAKAKNAN FLIKEGEKVK KLAEQYVEAA QK
0101: DWSIEGKNNT LSFPSYYIDE NAVICLDGDG CKIRSGSATI TEDSNLDTSI ACDSCDIWYH AFCVGFDPEG TSEDSWLCPR CAVAGMPGKS VVSGLGDGNS
0201: ECLLEDGFSR KLSVSVADAG ETALVVSMVE GNQWMEESSE DFLSNLEDCN DWKFESYLIS DANCLESPTP SAERDNMQPN LEAQELELSL SRDTSFSLPS
0301: NSSVLNDLKT NSANKIVNEP SGFDGLRISS TKLLDGSCSE NKPSESESSI GLHLGLSVGS FLSVESTKDR GTDDENTKDT GTDEVVAADV HQQHPSEESP
0401: LSGMEMGGPR HAGNGKVKAE IGTEVSAKKV RAEGKIQMAP IEKQANGQHV SVDAQKGHST VEVSTGDELR HNRKRKEVTS DIMSIVQGTD RRPLKGLAEK
0501: SDGERENATG LRVKKIMKRA SEDKESAVLV QKLRKEIREA VRSKSSIELG TNLFDPKLLT AFRAAIAGPI TETTARKLSP SALKVKKSML QKGKIRENLT
0601: KKIYATSKGK RRRAWDRDLE VEFWKHRCMR ATKPEKIETL KSVLDLLRTS ECIDPEQGSE SQTTNPILSR LYLADTSVFP RKDDIKPLAA LKASGNPEQN
0701: KEHASMEKVS KPALHSPAVK APETCKIPSK VGFSPYDHKG NKSNASSLKD ATAHGKPHPG KRPEGSSIPL SVASKVNSQK EAGVKSDDIK TDKRKWALEV
0801: LARKNAAASK NTTQEKQEDN ALLKGNYPLL TQLPRDMRPV LAPSQHNKIP ASVRQTQLYR LTEHFLRKAN LPVIRRTAET ELAVADAVNI EREVANRSNS
0901: KLVYVNLCSQ ELLHRSDGSK SSRALESDSD CSKSSRAIES DPLPPAESTD RSEPTTNELS TDPEIEEALR TAGLLSDSPP NSPLQEIKDL NDEDDPSKDN
1001: REEGPDNVFE MDSHLELDIY GDFEYDLEDE EYIGATALKA SKVQEEGESK MKVVFSTLNS DRSNDVLNLE EHVKVGIAEA PKNSPSSLKH HTDTCIRSST
1101: MEGGTDHSCL PPESFLGEGG KEPSLEECEE LYGPDKEPLI QRFPEKATEL YGLFHTEALA KNTVPGKNEN YGEDQAVKGG ENSPNPSQTG ENGRKEKSNT
1201: DTNKQTDSSS SVHGKVEAYI KEHIRPLCKS GVITVEQYRW AVGKTTEKVM KYHAKAKNAN FLIKEGEKVK KLAEQYVEAA QK
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKTISNSD VASVISLKRK HSDCSGDDGN SETKPEIYES LNELKLEEEE ELTTVHHESR
0401: SPSNNTTVDI FSIVKGTGRR KNLMRSNPTD KSSEAENAAG LRVKKIKRTP EDEKESMVLV EKLRKEIREA VRNKSMEDIR ENQFDPKLLA AFRAAVAGPK
0501: TGEAPRRSSA LAVKAKKLML QKGKVRENLT KKIYADLNGK RKSAWHRDCE VEFWKHRCIQ GRKPEKIETL KSVLSLLKNK PADTKTNFSS ETPQASNPIL
0601: SRLYLADTSV FPRNDNLKPL LAPKEMGNSQ NNGKPTEASK TLPKISAAKG SSVKAAGSKL NSGNKQSDGQ PNLTSSNSKE MVENPDDLKK DKRKWALQVL
0701: ARKKALAGNN STQDKEGSPE LKGNYPLLAQ LPADMRPSLA TSRHNKVPVA VRQTQLYRLT EHLLKKENLL TIRRSAATEL AVADAINIEK AIADKSSSKV
0801: VYLNLCSQEI LHHSESKTMD NAVEPNSSSP MADSESERIS SKDSDNPAVL EALRAAGLAD SPPNSPTRSV EVLPEKGDSS LDKTRETGPY NVFDMDSVPD
0901: TDIFGDFEYE LDEEDYFGAT MAKKASVMQP DESLTKVKVV LSTVQPGKSL NPSEVVEDEE TTTENLNETT NGKEDGKSFV PMELVPEAEG EGEGEGEGEG
1001: EGEGGGEILS VAECEELYGP GTEKLVERPL IEGFAENGVK AKAPDSECES NTQREFIASN FEITCIQEKK LPRSIQKCKP SEKPSKEEKG KADGFGNSIT
1101: KKVEAYIKEH IRPLCKSGVI NVEQYRWAVT KTTEKVMKYH SKAKSANFLI KEGDKIKKLA EQYVETASSG AHHKDKCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKTISNSD VASVISLKRK HSDCSGDDGN SETKPEIYES LNELKLEEEE ELTTVHHESR
0401: SPSNNTTVDI FSIVKGTGRR KNLMRSNPTD KSSEAENAAG LRVKKIKRTP EDEKESMVLV EKLRKEIREA VRNKSMEDIR ENQFDPKLLA AFRAAVAGPK
0501: TGEAPRRSSA LAVKAKKLML QKGKVRENLT KKIYADLNGK RKSAWHRDCE VEFWKHRCIQ GRKPEKIETL KSVLSLLKNK PADTKTNFSS ETPQASNPIL
0601: SRLYLADTSV FPRNDNLKPL LAPKEMGNSQ NNGKPTEASK TLPKISAAKG SSVKAAGSKL NSGNKQSDGQ PNLTSSNSKE MVENPDDLKK DKRKWALQVL
0701: ARKKALAGNN STQDKEGSPE LKGNYPLLAQ LPADMRPSLA TSRHNKVPVA VRQTQLYRLT EHLLKKENLL TIRRSAATEL AVADAINIEK AIADKSSSKV
0801: VYLNLCSQEI LHHSESKTMD NAVEPNSSSP MADSESERIS SKDSDNPAVL EALRAAGLAD SPPNSPTRSV EVLPEKGDSS LDKTRETGPY NVFDMDSVPD
0901: TDIFGDFEYE LDEEDYFGAT MAKKASVMQP DESLTKVKVV LSTVQPGKSL NPSEVVEDEE TTTENLNETT NGKEDGKSFV PMELVPEAEG EGEGEGEGEG
1001: EGEGGGEILS VAECEELYGP GTEKLVERPL IEGFAENGVK AKAPDSECES NTQREFIASN FEITCIQEKK LPRSIQKCKP SEKPSKEEKG KADGFGNSIT
1101: KKVEAYIKEH IRPLCKSGVI NVEQYRWAVT KTTEKVMKYH SKAKSANFLI KEGDKIKKLA EQYVETASSG AHHKDKCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.