Factsheet for VIT_16s0039g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0662g00020.t01
VIT_00s1188g00010.t01
VIT_03s0038g04360.t01
VIT_03s0180g00210.t01
VIT_07s0205g00030.t01
VIT_17s0000g10280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03000.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G03000.1	VIT_07s0205g00030.t01	AT2G22680.1	21798944
AT3G03000.1	VIT_03s0180g00210.t01	AT3G50060.1	21798944
AT3G03000.1	VIT_00s0662g00020.t01	AT5G10110.1	21798944
AT3G03000.1	VIT_00s1188g00010.t01	AT5G10110.1	21798944
AT3G03000.1	VIT_17s0000g10280.t01	AT5G63310.1	21798944
AT3G03000.1	VIT_07s0205g00030.t01	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g02060.t01	Wine grape	cytosol	84.66	84.66
Solyc03g097100.1.1	Tomato	cytosol	82.21	82.21
AT3G03000.1	Thale cress	cytosol	82.21	81.21
PGSC0003DMT400038352	Potato	cytosol	80.37	80.37
Bra021379.1-P	Field mustard	cytosol	79.75	76.92
CDY58544	Canola	cytosol	79.75	76.92
TraesCS1B01G208700.1	Wheat	cytosol	74.23	63.35
TraesCS1A01G193700.1	Wheat	cytosol	74.23	62.69
TraesCS1D01G197600.1	Wheat	cytosol	74.23	62.37
Os01t0505600-01	Rice	cytosol	77.3	59.72
HORVU1Hr1G080000.3	Barley	cytosol	65.64	57.22
OQU84270	Sorghum	cytosol, plastid	73.62	54.79
VIT_17s0000g04460.t01	Wine grape	cytosol	50.31	51.25
VIT_01s0011g02470.t01	Wine grape	cytosol	49.08	49.38
VIT_08s0040g00470.t01	Wine grape	cytosol	41.1	44.97
VIT_06s0009g01910.t01	Wine grape	cytosol	41.1	43.79
VIT_17s0000g00580.t01	Wine grape	cytosol	39.88	43.62
VIT_05s0020g04420.t01	Wine grape	cytosol	39.26	42.95
HORVU1Hr1G050720.2	Barley	cytosol	66.87	41.76
VIT_14s0030g02150.t01	Wine grape	cytosol	34.97	37.25
VIT_00s0179g00280.t01	Wine grape	cytosol	32.52	35.57
VIT_02s0241g00140.t01	Wine grape	cytosol	26.38	29.25
VIT_05s0094g01240.t01	Wine grape	cytosol	28.83	28.48
VIT_07s0031g00700.t01	Wine grape	cytosol	26.38	21.29

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100266587	wikigene:100266587	MapMan:35.1	EMBL:AM432161	ProteinID:CAN64783
ProteinID:CAN64783.1	ProteinID:CCB50594	ProteinID:CCB50594.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
UniProt:F6HEE8	EMBL:FN595750	GO:GO:0000325	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0008150	GO:GO:0043269	InterPro:IPR002048	EntrezGene:LOC100266587	wikigene:LOC100266587	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44256	PANTHER:PTHR44256:SF1	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI00015C8EF5	ArrayExpress:VIT_16s0039g01880	EnsemblPlantsGene:VIT_16s0039g01880	EnsemblPlants:VIT_16s0039g01880.t01	unigene:Vvi.15792	RefSeq:XP_002274503
RefSeq:XP_002274503.1	RefSeq:XP_019081382.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:1805758..1806558

Molecular Weight (calculated)

18165.3 Da

IEP (calculated)

4.138

GRAVY (calculated)

-0.367

Length

163 amino acids

Sequence
(BLAST)

001: MSASEPVKLD DEQLGELREI FRSFDRNNDG SLTQLELGSL LRSLGLKPSE DQLDSLIQKA DRNSNGLIEF SEFVALVEPE LIPAKCPYNE EQLRMIFRMF
101: DRDDKGYITA AELAHSMAKL GHALTANELT GMIKEADTDG DGCINFQEFS QAITSAAFDN LWG

Best Arabidopsis Sequence Match ( AT3G03000.1 )
(BLAST)

001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG

Arabidopsis Description

CML18Probable calcium-binding protein CML18 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.