Factsheet for VIT_03s0180g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g04280.t01
VIT_09s0002g05150.t01
VIT_11s0016g00640.t01
VIT_12s0035g01800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	VIT_12s0035g01800.t01	AT1G59750.1	17675404
AT3G50060.1	VIT_09s0002g05150.t01	AT3G15540.1	17675404
AT3G50060.1	VIT_09s0002g04280.t01	AT3G16120.1	21798944
AT3G50060.1	VIT_11s0016g00640.t01	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P20150_001	Banana	nucleus	46.86	52.79
KRH15420	Soybean	nucleus	47.52	52.75
KRH61351	Soybean	nucleus	44.88	52.51
KRH05621	Soybean	nucleus	46.2	52.24
VIT_18s0001g09850.t01	Wine grape	nucleus	52.15	50.48
VIT_07s0129g01050.t01	Wine grape	nucleus	51.49	50.0
GSMUA_Achr1P09750_001	Banana	nucleus	48.84	49.83
Zm00001d005300_P001	Maize	nucleus	46.53	49.47
GSMUA_Achr3P13070_001	Banana	nucleus	47.19	49.31
Os09t0106700-01	Rice	nucleus	50.83	48.28
GSMUA_Achr4P09450_001	Banana	nucleus	47.52	47.68
GSMUA_Achr1P26140_001	Banana	nucleus	44.22	47.52
GSMUA_AchrUn_...	Banana	nucleus	43.56	46.64
CDY12830	Canola	nucleus	38.94	46.64
AT5G67300.1	Thale cress	nucleus	46.86	46.56
Bra012149.1-P	Field mustard	nucleus	45.21	46.28
TraesCS5B01G157300.1	Wheat	nucleus	50.83	45.97
GSMUA_Achr9P22600_001	Banana	nucleus	43.56	45.83
TraesCS5A01G159600.1	Wheat	nucleus	50.83	45.83
GSMUA_Achr4P12950_001	Banana	nucleus	39.93	45.49
CDY01420	Canola	nucleus	39.27	45.25
CDY23023	Canola	nucleus	43.23	45.17
GSMUA_Achr3P28230_001	Banana	nucleus	42.9	45.14
TraesCS5D01G164600.1	Wheat	nucleus	50.83	44.9
Bra036048.1-P	Field mustard	nucleus	39.27	44.74
CDY02098	Canola	nucleus	43.23	44.71
Zm00001d019712_P001	Maize	nucleus	50.83	44.64
Bra012910.1-P	Field mustard	nucleus	42.9	44.37
CDY57355	Canola	nucleus	40.59	44.24
CDY30608	Canola	nucleus	38.28	43.77
EER98550	Sorghum	nucleus	52.81	43.72
GSMUA_Achr8P25220_001	Banana	nucleus	42.24	43.24
AT3G50060.1	Thale cress	nucleus	42.57	42.86
Bra029990.1-P	Field mustard	nucleus	40.26	41.5
VIT_18s0001g11170.t01	Wine grape	nucleus	31.02	41.05
VIT_13s0067g01360.t01	Wine grape	nucleus	33.0	39.53
CDX68566	Canola	nucleus	36.96	35.67
HORVU5Hr1G049880.1	Barley	plastid	49.84	35.61
VIT_17s0000g01890.t01	Wine grape	nucleus	20.13	27.6
VIT_13s0019g03200.t01	Wine grape	nucleus	33.66	26.98
VIT_08s0007g01540.t01	Wine grape	nucleus	35.97	26.59
VIT_18s0001g15260.t01	Wine grape	nucleus	23.76	22.43
VIT_04s0044g01380.t01	Wine grape	nucleus	21.45	21.52
VIT_01s0026g02600.t01	Wine grape	nucleus	25.08	16.63
VIT_08s0056g01190.t01	Wine grape	golgi	22.77	15.47
VIT_14s0108g01010.t01	Wine grape	nucleus	21.78	13.87

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100267575	wikigene:100267575	MapMan:15.5.2.1	ProteinID:CCB62347	ProteinID:CCB62347.1
UniProt:F6I5X9	EMBL:FN596754	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0030001	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	GO:GO:0046873	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100267575
wikigene:LOC100267575	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF691
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C90BE	ArrayExpress:VIT_03s0180g00210	EnsemblPlantsGene:VIT_03s0180g00210
EnsemblPlants:VIT_03s0180g00210.t01	unigene:Vvi.22837	RefSeq:XP_002285389	RefSeq:XP_002285389.1	:	:

Description

No Description!

Coordinates

chr3:+:6147352..6148726

Molecular Weight (calculated)

33452.4 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.727

Length

303 amino acids

Sequence
(BLAST)

001: MEALQNEADR VKGPWSPQED QALQCLVKRY GARNWSLISR SIPGRSGKSC RLRWCNQLSP QVEHRPFTPE EDRRIIEAHA KYGNKWATIA RMLNGRTDNA
101: IKNHWNSTLK RKFAAEIEQV PAPVSVDNEG SRPEKRQSSG GGPSMPATGL CLSPGSPTGS DVSDTGFPVV SSPNLYRPVA RTGAVQVPPQ QFEPSSKKDD
201: PPTALTLSLP GTETYENEYE SPPLDSAPRH NKLASPEKQP ALTFAMPENP EPMTFGSDFF LMIQDMIKTE VKNYMSGLEI NEICSQSEGN IRNAAINRIG
301: MGD

Best Arabidopsis Sequence Match ( AT5G67300.1 )
(BLAST)

001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE

Arabidopsis Description

MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.