Factsheet for VIT_04s0044g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P16490_001	Banana	nucleus	29.8	53.57
Zm00001d004681_P001	Maize	nucleus	33.77	53.4
Zm00001d041818_P001	Maize	nucleus	37.42	50.22
VIT_17s0000g01890.t01	Wine grape	nucleus	35.76	48.87
GSMUA_Achr9P08480_001	Banana	nucleus	39.4	46.48
EES15780	Sorghum	nucleus	38.41	46.03
CDY71713	Canola	nucleus	34.77	45.65
GSMUA_Achr6P17630_001	Banana	nucleus	38.74	44.49
GSMUA_Achr3P18970_001	Banana	nucleus	38.41	44.27
CDY28302	Canola	nucleus	36.42	43.82
Bra034565.1-P	Field mustard	nucleus	36.09	43.43
CDX75353	Canola	nucleus	36.09	43.43
Bra011441.1-P	Field mustard	nucleus	35.76	43.37
AT4G33450.1	Thale cress	nucleus	35.76	43.2
CDX68977	Canola	nucleus	35.43	42.8
GSMUA_Achr10P...	Banana	nucleus	36.42	42.31
VIT_18s0001g15260.t01	Wine grape	nucleus	44.37	41.74
Zm00001d049079_P001	Maize	nucleus	37.42	40.79
TraesCS4B01G105200.1	Wheat	nucleus	37.09	40.73
HORVU4Hr1G017040.2	Barley	nucleus	37.42	40.65
EES09660	Sorghum	nucleus	37.09	40.58
Os11t0207600-00	Rice	nucleus, plastid	35.76	40.45
TraesCS4A01G211100.1	Wheat	nucleus	36.76	40.22
TraesCS4D01G102100.1	Wheat	nucleus	36.76	40.07
VIT_18s0001g11170.t01	Wine grape	nucleus	21.85	28.82
VIT_13s0067g01360.t01	Wine grape	nucleus	20.86	24.9
VIT_08s0056g01190.t01	Wine grape	golgi	36.76	24.89
VIT_01s0026g02600.t01	Wine grape	nucleus	37.09	24.51
VIT_18s0001g09850.t01	Wine grape	nucleus	22.85	22.04
VIT_07s0129g01050.t01	Wine grape	nucleus	22.52	21.79
VIT_14s0108g01010.t01	Wine grape	nucleus	34.11	21.64
VIT_03s0180g00210.t01	Wine grape	nucleus	21.52	21.45
VIT_13s0019g03200.t01	Wine grape	nucleus	23.51	18.78
VIT_08s0007g01540.t01	Wine grape	nucleus	24.17	17.8

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100242035	wikigene:100242035	MapMan:15.5.2.1	EMBL:AM456989	ProteinID:CAN67848
ProteinID:CAN67848.1	ProteinID:CCB60406	ProteinID:CCB60406.1	UniProt:F6I0E0	EMBL:FN596506	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	GO:GO:0045893	GO:GO:2000652	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100242035
wikigene:LOC100242035	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF496
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CBB7F	ArrayExpress:VIT_04s0044g01380	EnsemblPlantsGene:VIT_04s0044g01380
EnsemblPlants:VIT_04s0044g01380.t01	RefSeq:XP_002274206	RefSeq:XP_002274206.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:22916097..22917305

Molecular Weight (calculated)

34370.9 Da

IEP (calculated)

9.664

GRAVY (calculated)

-0.961

Length

302 amino acids

Sequence
(BLAST)

001: MEDSAGGSSD DGRNCQRGHW RPAEDEKLRQ LVDQYGPHNW NSIADKLEGR SGKSCRLRWF NQLDPRINRK PFTEEEEERL LAAHRIHGNK WSLIARLFPG
101: RTDNAVKNHY HVIMARRHRE RLRQCSKRSC QDHPNDSNTN PSSFFLKFSR PQLEYNTKLG FPDFQNHERN GIFPVSFSKS LPSWTHSGST NNPNSLRLDK
201: IFGASSSSCS KEPSHNGLDQ SLSSYYSNSS SYGSYRNLSS LGMPYLGDDR GIHGAMKNKL VKLSDNSTTF PKLRIITEQK QEESIKSTDV PFIDFLGVGS
301: SS

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.