Factsheet for VIT_01s0026g02600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50566	Soybean	nucleus	55.58	58.26
KRG89586	Soybean	nucleus	58.21	54.73
KRH74887	Soybean	plastid	49.45	48.6
GSMUA_Achr6P02580_001	Banana	nucleus	37.64	48.59
Os08t0435700-00	Rice	nucleus	27.13	48.06
VIT_17s0000g01890.t01	Wine grape	nucleus	23.19	47.96
GSMUA_Achr5P23290_001	Banana	nucleus	31.29	47.35
KRH70748	Soybean	nucleus	48.14	47.11
CDY67868	Canola	nucleus	29.32	44.97
Bra003995.1-P	Field mustard	nucleus	29.1	44.78
CDY07345	Canola	nucleus	29.1	44.63
Bra004394.1-P	Field mustard	nucleus	30.85	44.06
CDX95921	Canola	nucleus	30.63	43.75
CDY40941	Canola	nucleus	30.42	43.44
AT1G69560.2	Thale cress	nucleus	32.17	42.49
CDY50737	Canola	nucleus	31.73	42.15
CDY46444	Canola	nucleus	31.95	41.36
Bra016285.1-P	Field mustard	nucleus	31.95	41.36
CDY44993	Canola	nucleus	31.73	41.08
AT1G26780.2	Thale cress	nucleus	32.17	40.95
TraesCS3B01G473600.1	Wheat	nucleus	30.2	38.98
TraesCS3A01G439500.1	Wheat	nucleus	30.2	38.98
TraesCS3D01G432300.2	Wheat	nucleus	29.98	38.7
Solyc05g007870.1.1	Tomato	nucleus	34.79	38.13
Zm00001d032194_P002	Maize	nucleus, plastid	31.51	37.7
VIT_04s0044g01380.t01	Wine grape	nucleus	24.51	37.09
PGSC0003DMT400047415	Potato	nucleus	34.57	36.83
VIT_18s0001g15260.t01	Wine grape	nucleus	25.82	36.76
HORVU3Hr1G096010.6	Barley	nucleus	27.13	32.46
VIT_08s0056g01190.t01	Wine grape	golgi	31.51	32.29
VIT_14s0108g01010.t01	Wine grape	nucleus	32.82	31.51
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	31.95	31.06
VIT_18s0001g11170.t01	Wine grape	nucleus	15.32	30.57
VIT_07s0129g01050.t01	Wine grape	nucleus	17.51	25.64
VIT_18s0001g09850.t01	Wine grape	nucleus	17.51	25.56
VIT_13s0067g01360.t01	Wine grape	nucleus	14.0	25.3
VIT_03s0180g00210.t01	Wine grape	nucleus	16.63	25.08
OQU80507	Sorghum	nucleus	33.7	22.55
VIT_13s0019g03200.t01	Wine grape	nucleus	18.16	21.96
VIT_08s0007g01540.t01	Wine grape	nucleus	17.29	19.27
Os08t0435725-00	Rice	cytosol	3.94	18.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100253313	wikigene:100253313	MapMan:15.5.2.1	EMBL:AM428392	ProteinID:CAN60324
ProteinID:CAN60324.1	ProteinID:CCB56534	ProteinID:CCB56534.1	UniProt:F6HPQ3	EMBL:FN596002	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100253313	wikigene:LOC100253313	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF473	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015CBBC4	ArrayExpress:VIT_01s0026g02600	EnsemblPlantsGene:VIT_01s0026g02600	EnsemblPlants:VIT_01s0026g02600.t01	unigene:Vvi.15546
RefSeq:XP_002269342	RefSeq:XP_002269342.2	RefSeq:XP_010651935.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:12221764..12223982

Molecular Weight (calculated)

50373.3 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.698

Length

457 amino acids

Sequence
(BLAST)

001: MANKCVIYAP DNTNGLSCYS STPSSSSSST TSLGTSMGMV FADMGALSIN PNYGVVPAVS SSQESTYVRK GPSEVENGRA CWGFPFMGNC TAGSLEEHHN
101: SDVGDGKGSD CSDGFGENNE TMDLNANINE ENPNENIVSG KETDSGHSKL CARGHWRPAE DTKLKELVAL YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD
201: PRINRRAFSE EEEERLMDAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSSA YRRRKLSQSV YRRMEEDPSF VCRDTATRTE TMPPYSINLS
301: SGGINNNLSP FPFATFNGAV GGVVYGSNGS PQVNSGGEAI SSSKLPPHTG FCAQQTPFEF FSGPKSHDMI SMFSQHRSWD RPRDEPNNNT SGFYPQYPPL
401: MMAMQQSNYH NTCNFPNSTA STPQASATEP SSSENRVASH FETIPPPFID FLGVGAT

Best Arabidopsis Sequence Match ( AT1G69560.1 )
(BLAST)

001: MEMVHADVAS LSITPCFPSS LSSSSHHHYN QQQHCIMSED QHHSMDQTTS SDYFSLNIDN AQHLRSYYTS HREEDMNPNL SDYSNCNKKD TTVYRSCGHS
101: SKASVSRGHW RPAEDTKLKE LVAVYGPQNW NLIAEKLQGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL MQAHRLYGNK WAMIARLFPG RTDNSVKNHW
201: HVIMARKFRE QSSSYRRRKT MVSLKPLINP NPHIFNDFDP TRLALTHLAS SDHKQLMLPV PCFPGYDHEN ESPLMVDMFE TQMMVGDYIA WTQEATTFDF
301: LNQTGKSEIF ERINEEKKPP FFDFLGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.