Factsheet for Bra004394.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95921	Canola	nucleus	99.06	99.06
CDY40941	Canola	nucleus	95.94	95.94
Bra003995.1-P	Field mustard	nucleus	71.25	76.77
AT1G69560.2	Thale cress	nucleus	70.0	64.74
Bra016285.1-P	Field mustard	nucleus	55.31	50.14
Bra039036.1-P	Field mustard	nucleus	26.88	44.56
Bra015992.1-P	Field mustard	nucleus	30.31	42.54
Bra008096.1-P	Field mustard	nucleus	30.0	41.03
Os08t0435700-00	Rice	nucleus	32.19	39.92
Bra016575.1-P	Field mustard	nucleus	30.0	39.67
Bra031008.1-P	Field mustard	nucleus	29.06	37.65
Bra025652.1-P	Field mustard	nucleus	29.38	36.29
Bra011441.1-P	Field mustard	nucleus	28.12	36.14
Bra034565.1-P	Field mustard	nucleus	27.81	35.46
GSMUA_Achr5P23290_001	Banana	nucleus	33.44	35.43
GSMUA_Achr6P02580_001	Banana	nucleus	38.12	34.46
Bra033078.1-P	Field mustard	nucleus	30.62	34.27
Bra037004.1-P	Field mustard	nucleus	25.62	34.02
Bra002107.1-P	Field mustard	nucleus	33.44	33.02
Bra006422.1-P	Field mustard	nucleus	32.19	32.91
Bra023637.1-P	Field mustard	nucleus	32.19	32.39
KRH50566	Soybean	nucleus	42.81	31.42
VIT_01s0026g02600.t01	Wine grape	nucleus	44.06	30.85
TraesCS3A01G439500.1	Wheat	nucleus	33.44	30.23
TraesCS3B01G473600.1	Wheat	nucleus	33.44	30.23
Solyc05g007870.1.1	Tomato	nucleus	39.38	30.22
TraesCS3D01G432300.2	Wheat	nucleus	33.12	29.94
PGSC0003DMT400047415	Potato	nucleus	39.38	29.37
Zm00001d032194_P002	Maize	nucleus, plastid	34.69	29.06
KRH70748	Soybean	nucleus	40.62	27.84
KRG89586	Soybean	nucleus	41.88	27.57
KRH74887	Soybean	plastid	40.0	27.53
HORVU3Hr1G096010.6	Barley	nucleus	31.25	26.18
Bra017813.1-P	Field mustard	nucleus	20.31	24.53
Bra036048.1-P	Field mustard	nucleus	20.0	24.06
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	35.31	24.04
Bra012910.1-P	Field mustard	nucleus	21.88	23.89
Bra012149.1-P	Field mustard	nucleus	21.25	22.97
Bra032176.1-P	Field mustard	nucleus	20.62	22.6
Bra029990.1-P	Field mustard	nucleus	20.0	21.77
Bra011749.1-P	Field mustard	nucleus	21.56	21.04
Bra010593.1-P	Field mustard	nucleus	20.0	20.98
Bra001323.1-P	Field mustard	nucleus	20.62	19.7
Bra007186.1-P	Field mustard	nucleus	21.88	18.87
Bra005006.1-P	Field mustard	nucleus	23.44	18.84
Bra034057.1-P	Field mustard	nucleus	22.19	18.35
OQU80507	Sorghum	nucleus	35.0	16.4
Os08t0435725-00	Rice	cytosol	2.19	7.0

Protein Annotations

EnsemblPlants:Bra004394.1	EnsemblPlants:Bra004394.1-P	EnsemblPlantsGene:Bra004394	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF473	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000254189C	UniProt:M4CJL0	MapMan:15.5.2.1	:	:	:

Description

AT1G69560 (E=6e-115) MYB105, AtMYB105 | MYB105 (myb domain protein 105); DNA binding / transcription factor

Coordinates

chrA07:+:18421662..18422801

Molecular Weight (calculated)

37017.8 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.808

Length

320 amino acids

Sequence
(BLAST)

001: MGMEIAYTNV SFPSITPHFP SSSHPLTINN NIVMSKDHHR WMDQIAYFSL NVNSDQHKGH YYHASHGEEE MKNPNRCNCS TSSKKEMRDC GSCRHSLKAS
101: VSRGHWRPAE DAKLKELVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH SLYGNKWAMI ARLFPGRTDN SVKNHWHVVM
201: ARKFREQSSV YPRRKTMITH KPLANPNPHS CNDFEPTRSD LIHLVSNDQS HLMLPIPCFS GYDHGMLENQ MMIDDYSSRT REVATTFGDS NQTGKCEMLD
301: ESMNEKKKPH FFDFLGLGTV

Best Arabidopsis Sequence Match ( AT1G69560.2 )
(BLAST)

001: MMFKVIFNIC SSPPMRMEMV HADVASLSIT PCFPSSLSSS SHHHYNQQQH CIMSEDQHHS MDQTTSSDYF SLNIDNAQHL RSYYTSHREE DMNPNLSDYS
101: NCNKKDTTVY RSCGHSSKAS VSRGHWRPAE DTKLKELVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH RLYGNKWAMI
201: ARLFPGRTDN SVKNHWHVIM ARKFREQSSS YRRRKTMVSL KPLINPNPHI FNDFDPTRLA LTHLASSDHK QLMLPVPCFP GYDHENESPL MVDMFETQMM
301: VGDYIAWTQE ATTFDFLNQT GKSEIFERIN EEKKPPFFDF LGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.