Factsheet for Bra025652.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30264	Canola	nucleus	95.37	95.0
CDX74436	Canola	nucleus	99.23	71.19
CDY67808	Canola	nucleus	36.68	59.75
Bra039036.1-P	Field mustard	nucleus	35.52	47.67
Bra033078.1-P	Field mustard	nucleus	51.35	46.5
AT5G39700.1	Thale cress	nucleus	30.12	41.05
Bra015992.1-P	Field mustard	nucleus	33.59	38.16
Bra008096.1-P	Field mustard	nucleus	33.59	37.18
GSMUA_Achr5P27750_001	Banana	nucleus	35.52	36.51
Bra016575.1-P	Field mustard	nucleus	33.2	35.54
Os01t0274800-01	Rice	nucleus	36.29	35.47
Bra031008.1-P	Field mustard	nucleus	33.59	35.22
GSMUA_Achr6P15900_001	Banana	nucleus	36.29	34.18
Bra011441.1-P	Field mustard	nucleus	31.66	32.93
Bra034565.1-P	Field mustard	nucleus	31.66	32.67
GSMUA_Achr10P...	Banana	nucleus	37.84	32.24
GSMUA_Achr9P04990_001	Banana	nucleus	36.68	31.46
Bra003995.1-P	Field mustard	nucleus	35.52	30.98
EES02760	Sorghum	nucleus	31.66	30.71
Bra037004.1-P	Field mustard	nucleus	28.57	30.71
TraesCS3B01G217100.1	Wheat	nucleus	36.68	30.35
TraesCS3D01G191400.1	Wheat	nucleus	37.07	29.91
Bra023637.1-P	Field mustard	nucleus	36.68	29.87
TraesCS3A01G187800.1	Wheat	nucleus	37.45	29.85
GSMUA_Achr9P17000_001	Banana	nucleus	34.75	29.61
Bra006422.1-P	Field mustard	nucleus	35.52	29.39
Bra004394.1-P	Field mustard	nucleus	36.29	29.38
HORVU3Hr1G038700.2	Barley	nucleus	37.07	29.09
Bra002107.1-P	Field mustard	nucleus	35.91	28.7
GSMUA_Achr10P...	Banana	nucleus	35.52	28.66
Zm00001d040428_P001	Maize	nucleus	30.89	28.27
GSMUA_Achr3P09490_001	Banana	nucleus	34.75	28.21
GSMUA_Achr6P32250_001	Banana	nucleus	36.29	27.17
Bra016285.1-P	Field mustard	nucleus	35.91	26.35
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	39.38	25.89
Bra012149.1-P	Field mustard	nucleus	24.71	21.62
Bra017813.1-P	Field mustard	nucleus	21.62	21.13
Bra036048.1-P	Field mustard	nucleus	21.62	21.05
Bra032176.1-P	Field mustard	nucleus	23.55	20.89
Bra012910.1-P	Field mustard	nucleus	23.55	20.82
Bra010593.1-P	Field mustard	nucleus	23.94	20.33
Bra001323.1-P	Field mustard	nucleus	25.87	20.0
Bra029990.1-P	Field mustard	nucleus	21.62	19.05
Bra011749.1-P	Field mustard	nucleus	23.55	18.6
Bra007186.1-P	Field mustard	nucleus	25.48	17.79
Bra034057.1-P	Field mustard	nucleus	25.1	16.8
Bra005006.1-P	Field mustard	nucleus	25.1	16.33

Protein Annotations

EnsemblPlants:Bra025652.1	EnsemblPlants:Bra025652.1-P	EnsemblPlantsGene:Bra025652	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF473	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000254497D	UniProt:M4EA45	MapMan:15.5.2.1	:	:

Description

AT3G29020 (E=2e-063) MYB110 | MYB110 (myb domain protein 110); DNA binding / transcription factor

Coordinates

chrA04:-:7233563..7234586

Molecular Weight (calculated)

29830.6 Da

IEP (calculated)

10.349

GRAVY (calculated)

-0.765

Length

259 amino acids

Sequence
(BLAST)

001: MHQENKKKQL SKVCTRGHWK PSEDFKLKEL VGVFGPKKWN HIARKMQGRT GKSCRLRWFN QLDPRIIKSA FSEEEEEKLL AVHRTFGNKW SLIAKLFPGR
101: TDNAVKNHWH ILMARKLRKQ SISYSKSRKR QTPSPDEITP LHLLPSFNLF PGSVGDESTE FNNYSWKMPK EESANLRDQF LLEEYCSMRM SMQYLGHHHH
201: HQHGFSTFPA DSVELLTRYL SNSQPSSSPP TSALSTSGAE NTMTTTPPRF IDFLGVGAS

Best Arabidopsis Sequence Match ( AT3G29020.2 )
(BLAST)

001: MKMDFSCFQE YPFEFHCRGT TFNGFRENNA VSETVEEFCN KRRMQKKSDD LKTKKKKKQS VSRVCSRGHW RISEDTQLME LVSVYGPQNW NHIAESMQGR
101: TGKSCRLRWF NQLDPRINKR AFSDEEEERL LAAHRAFGNK WAMIAKLFNG RTDNALKNHW HVLMARKMRQ QSSSYVQRFN GSAHESNTDH KIFNLSPGNV
201: DDDEDVNLKK CSWEMLKEGT TNLKAQYLQE EYSSSRMPMQ GPHHHYSTFP ADSLALTLHV SIQEPSSSSS LSLPSSSTTG EHTMVTRYFE TIKPPAFIDF
301: LGVGH

Arabidopsis Description

MYB110Myb domain protein 110 [Source:UniProtKB/TrEMBL;Acc:F4J1R5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.