Factsheet for Bra039036.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20004	Canola	nucleus	97.41	65.51
CDY66025	Canola	nucleus	95.85	64.24
AT3G29020.2	Thale cress	nucleus	77.72	49.18
Bra033078.1-P	Field mustard	nucleus	65.8	44.41
Bra025652.1-P	Field mustard	nucleus	47.67	35.52
GSMUA_Achr5P27750_001	Banana	nucleus	44.56	34.13
Bra015992.1-P	Field mustard	nucleus	39.9	33.77
Os01t0274800-01	Rice	nucleus	45.08	32.83
Bra008096.1-P	Field mustard	nucleus	39.38	32.48
Bra016575.1-P	Field mustard	nucleus	38.34	30.58
Bra031008.1-P	Field mustard	nucleus	38.34	29.96
GSMUA_Achr6P15900_001	Banana	nucleus	42.49	29.82
GSMUA_Achr9P04990_001	Banana	nucleus	46.63	29.8
Bra003995.1-P	Field mustard	nucleus	45.08	29.29
TraesCS3B01G217100.1	Wheat	nucleus	46.11	28.43
Bra011441.1-P	Field mustard	nucleus	36.27	28.11
EES02760	Sorghum	nucleus	38.86	28.09
TraesCS3D01G191400.1	Wheat	nucleus	46.11	27.73
GSMUA_Achr10P...	Banana	nucleus	43.52	27.63
Bra034565.1-P	Field mustard	nucleus	35.75	27.49
TraesCS3A01G187800.1	Wheat	nucleus	46.11	27.38
GSMUA_Achr9P17000_001	Banana	nucleus	43.01	27.3
GSMUA_Achr10P...	Banana	nucleus	45.08	27.1
HORVU3Hr1G038700.2	Barley	nucleus	46.11	26.97
GSMUA_Achr3P09490_001	Banana	nucleus	44.56	26.96
Bra004394.1-P	Field mustard	nucleus	44.56	26.88
GSMUA_Achr6P32250_001	Banana	nucleus	47.67	26.59
Bra037004.1-P	Field mustard	nucleus	33.16	26.56
Bra023637.1-P	Field mustard	nucleus	43.52	26.42
Bra002107.1-P	Field mustard	nucleus	44.04	26.23
Bra006422.1-P	Field mustard	nucleus	41.45	25.56
Zm00001d040428_P001	Maize	nucleus	37.31	25.44
Bra016285.1-P	Field mustard	nucleus	45.08	24.65
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	46.63	22.84
Bra036048.1-P	Field mustard	nucleus	31.09	22.56
Bra032176.1-P	Field mustard	nucleus	32.64	21.58
Bra012910.1-P	Field mustard	nucleus	31.61	20.82
Bra017813.1-P	Field mustard	nucleus	28.5	20.75
Bra012149.1-P	Field mustard	nucleus	31.61	20.61
Bra029990.1-P	Field mustard	nucleus	29.53	19.39
Bra010593.1-P	Field mustard	nucleus	30.57	19.34
Bra011749.1-P	Field mustard	nucleus	31.61	18.6
Bra007186.1-P	Field mustard	nucleus	32.12	16.71
Bra001323.1-P	Field mustard	nucleus	28.5	16.42
Bra005006.1-P	Field mustard	nucleus	31.09	15.08
Bra034057.1-P	Field mustard	nucleus	29.02	14.47

Protein Annotations

EnsemblPlants:Bra039036.1	EnsemblPlants:Bra039036.1-P	EnsemblPlantsGene:Bra039036	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF473	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002541C17	UniProt:M4FD66	MapMan:15.5.2.1	:	:	:

Description

AT3G29020 (E=1e-076) MYB110, AtMYB110 | MYB110 (myb domain protein 110); DNA binding / transcription factor

Coordinates

chrA09:-:1503546..1504210

Molecular Weight (calculated)

22153.3 Da

IEP (calculated)

10.515

GRAVY (calculated)

-0.690

Length

193 amino acids

Sequence
(BLAST)

001: MDISFFQAYP FDLPCSRAFN GDGENNVVEF SNKTMMVKVS DESKKKQRGS RVCSRGHWRV SEDSQLTELV SVHGPQNWNH IAEKMQGRTG KSCRLRWFNQ
101: LDPRINKRAF SVEEEERLLA AHGAFGNKWA MIAKIFNGRT DNALKNHWHV LMARKLRQQS SSYTRRFNGS AHKPNADHTS FNISPGLCLL NLI

Best Arabidopsis Sequence Match ( AT3G29020.1 )
(BLAST)

001: MDFSCFQEYP FEFHCRGTTF NGFRENNAVS ETVEEFCNKR RMQKKSDDLK TKKKKKQSVS RVCSRGHWRI SEDTQLMELV SVYGPQNWNH IAESMQGRTG
101: KSCRLRWFNQ LDPRINKRAF SDEEEERLLA AHRAFGNKWA MIAKLFNGRT DNALKNHWHV LMARKMRQQS SSYVQRFNGS AHESNTDHKI FNLSPGLSLL
201: TLHICIEFNS VIVMRYFRYL SLRNNELMVW SQK

Arabidopsis Description

MYB110Myb domain protein 110 [Source:UniProtKB/TrEMBL;Acc:F4J1R5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.