Factsheet for Bra008096.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58312	Canola	nucleus	100.0	100.0
CDX82074	Canola	nucleus	95.3	95.71
Bra015992.1-P	Field mustard	nucleus	85.47	87.72
AT1G73410.1	Thale cress	nucleus	84.62	81.48
Bra016575.1-P	Field mustard	nucleus	64.96	62.81
Bra031008.1-P	Field mustard	nucleus	66.24	62.75
VIT_17s0000g01890.t01	Wine grape	nucleus	53.42	56.56
KRH09502	Soybean	nucleus	53.42	53.42
GSMUA_Achr9P29090_001	Banana	nucleus	47.86	53.33
KRH38975	Soybean	nucleus	52.56	51.9
PGSC0003DMT400079714	Potato	nucleus	50.85	48.77
EER93554	Sorghum	nucleus	47.01	46.03
Os03t0720800-01	Rice	nucleus	47.86	45.71
Zm00001d013399_P001	Maize	nucleus	45.73	44.58
HORVU4Hr1G008640.1	Barley	nucleus	46.15	44.44
Zm00001d033815_P001	Maize	nucleus	47.01	44.35
TraesCS4B01G052400.2	Wheat	nucleus	45.73	42.97
TraesCS4D01G052600.1	Wheat	nucleus	45.73	42.8
TraesCS4A01G262500.3	Wheat	nucleus	47.44	40.22
Bra011441.1-P	Field mustard	nucleus	42.31	39.76
Bra039036.1-P	Field mustard	nucleus	32.48	39.38
Bra034565.1-P	Field mustard	nucleus	41.88	39.04
Bra037004.1-P	Field mustard	nucleus	38.89	37.76
Bra025652.1-P	Field mustard	nucleus	37.18	33.59
Bra003995.1-P	Field mustard	nucleus	39.32	30.98
Bra023637.1-P	Field mustard	nucleus	41.88	30.82
Bra033078.1-P	Field mustard	nucleus	37.18	30.42
Bra006422.1-P	Field mustard	nucleus	40.6	30.35
Bra004394.1-P	Field mustard	nucleus	41.03	30.0
Bra002107.1-P	Field mustard	nucleus	41.45	29.94
Bra016285.1-P	Field mustard	nucleus	42.31	28.05
Bra036048.1-P	Field mustard	nucleus	26.92	23.68
Bra012910.1-P	Field mustard	nucleus	28.21	22.53
Bra012149.1-P	Field mustard	nucleus	27.78	21.96
Bra017813.1-P	Field mustard	nucleus	24.36	21.51
Bra029990.1-P	Field mustard	nucleus	26.07	20.75
Bra001323.1-P	Field mustard	nucleus	29.06	20.3
Bra032176.1-P	Field mustard	nucleus	25.21	20.21
Bra010593.1-P	Field mustard	nucleus	26.07	20.0
Bra011749.1-P	Field mustard	nucleus	25.64	18.29
Bra034057.1-P	Field mustard	nucleus	29.49	17.83
Bra007186.1-P	Field mustard	nucleus	26.92	16.98
Bra005006.1-P	Field mustard	nucleus	27.35	16.08

Protein Annotations

EnsemblPlants:Bra008096.1	EnsemblPlants:Bra008096.1-P	EnsemblPlantsGene:Bra008096	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF665	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00025455AA	UniProt:M4CV50	MapMan:15.5.2.1	:	:

Description

AT1G73410 (E=6e-101) ATMYB54, MYB54 | MYB54 (MYB DOMAIN PROTEIN 54); DNA binding / transcription factor

Coordinates

chrA02:+:13109518..13110861

Molecular Weight (calculated)

27335.3 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.847

Length

234 amino acids

Sequence
(BLAST)

001: MCSRGHWRPA EDEKLKDLVE QYGPHNWNAI ALKLPGRSGK SCRLRWFNQL DPRINRNPFT EEEEERLLAA HRIHGNRWSI IARLFPGRTD NAVKNHWHVI
101: MARRTRRQTS KPRILTSTTS SLLETEQIMM ASGDRKRILG DGISYPYQFS HINHLQLLKE FFTEKIAFNT KDAMVANQSK KPMEFYNFLQ VDMDSNKSEI
201: VDQDSDQSNP HDSDNKNESR VPFFDFLSVK NSTS

Best Arabidopsis Sequence Match ( AT1G73410.1 )
(BLAST)

001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS

Arabidopsis Description

ATMYB54MYB54 [Source:UniProtKB/TrEMBL;Acc:A0A178WGB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.