Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G008640.1 | Barley | nucleus | 81.52 | 92.59 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 82.61 | 91.2 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 81.88 | 90.76 |
| Os03t0720800-01 | Rice | nucleus | 72.83 | 82.04 |
| EER93554 | Sorghum | nucleus | 67.75 | 78.24 |
| Zm00001d033815_P001 | Maize | nucleus | 67.03 | 74.6 |
| Zm00001d013399_P001 | Maize | nucleus | 63.41 | 72.92 |
| CDY35992 | Canola | nucleus | 35.14 | 61.78 |
| CDY21728 | Canola | nucleus | 34.42 | 60.51 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 43.48 | 57.14 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 44.93 | 56.11 |
| CDX83880 | Canola | nucleus | 35.87 | 54.4 |
| KRH38975 | Soybean | nucleus | 43.12 | 50.21 |
| KRH09502 | Soybean | nucleus | 41.67 | 49.15 |
| CDX72988 | Canola | nucleus | 39.49 | 48.23 |
| CDX82074 | Canola | nucleus | 40.58 | 48.07 |
| PGSC0003DMT400079714 | Potato | nucleus | 42.39 | 47.95 |
| CDX96475 | Canola | nucleus | 39.49 | 47.81 |
| Bra015992.1-P | Field mustard | nucleus | 39.49 | 47.81 |
| CDY58312 | Canola | nucleus | 40.22 | 47.44 |
| Bra008096.1-P | Field mustard | nucleus | 40.22 | 47.44 |
| CDX96742 | Canola | nucleus | 41.3 | 47.11 |
| Bra016575.1-P | Field mustard | nucleus | 41.3 | 47.11 |
| AT1G17950.1 | Thale cress | nucleus | 42.39 | 46.99 |
| CDX81853 | Canola | nucleus | 41.3 | 46.15 |
| Bra031008.1-P | Field mustard | nucleus | 41.3 | 46.15 |
| CDY21727 | Canola | nucleus | 41.3 | 45.42 |
| AT1G73410.1 | Thale cress | nucleus | 39.86 | 45.27 |
| TraesCS4A01G211100.1 | Wheat | nucleus | 34.06 | 34.06 |
| TraesCS3A01G187800.1 | Wheat | nucleus | 36.59 | 31.08 |
| TraesCS3A01G439500.1 | Wheat | nucleus | 33.7 | 26.27 |
| TraesCS4A01G047900.1 | Wheat | nucleus | 17.03 | 24.74 |
| TraesCS7A01G526600.1 | Wheat | nucleus | 24.64 | 23.37 |
| TraesCS7A01G526500.1 | Wheat | nucleus | 24.64 | 22.9 |
| TraesCS6A01G173800.1 | Wheat | nucleus | 23.91 | 22.15 |
| TraesCS4A01G006100.1 | Wheat | nucleus | 20.29 | 20.51 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 22.46 | 18.45 |
| TraesCS1A01G223600.1 | Wheat | nucleus | 21.01 | 17.52 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 22.83 | 13.64 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G262500.3 | EnsemblPlantsGene:TraesCS4A01G262500 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF578 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:574840760..574842011
Molecular Weight (calculated)
31634.9 Da
IEP (calculated)
7.850
GRAVY (calculated)
-0.784
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTRGHWRPS EDERLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFS EEEEELLLAS HRVHGNRWAV IARLFPGRTD NAVKNHWHVI
101: MARRCRERMR LSSNRRATPA AASTTTAGAE KDESPKNTTG GEKPRLPETN TMAALLHKYR REFAAPFAIS HHSSKEGYCS STNEGEMIDP LHACRVLVYR
201: AFSHQFSLYV WNESIRVCFA DTNRSVEFYD FLQVNVSSSD TKCGSSIEEN RDDDDDQQAE GQVSLIDFME VGTSRQ
101: MARRCRERMR LSSNRRATPA AASTTTAGAE KDESPKNTTG GEKPRLPETN TMAALLHKYR REFAAPFAIS HHSSKEGYCS STNEGEMIDP LHACRVLVYR
201: AFSHQFSLYV WNESIRVCFA DTNRSVEFYD FLQVNVSSSD TKCGSSIEEN RDDDDDQQAE GQVSLIDFME VGTSRQ
001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
Arabidopsis Description
ATMYB54MYB54 [Source:UniProtKB/TrEMBL;Acc:A0A178WGB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.