CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013399_P001	Maize	nucleus	89.96	89.58
Zm00001d033815_P001	Maize	nucleus	91.21	87.9
Os03t0720800-01	Rice	nucleus	80.75	78.78
HORVU4Hr1G008640.1	Barley	nucleus	79.5	78.19
TraesCS4B01G052400.2	Wheat	nucleus	78.66	75.5
TraesCS4D01G052600.1	Wheat	nucleus	78.24	74.8
TraesCS4A01G262500.3	Wheat	nucleus	78.24	67.75
CDY35992	Canola	nucleus	41.42	63.06
CDY21728	Canola	nucleus	40.59	61.78
GSMUA_Achr9P29090_001	Banana	nucleus	52.3	59.52
VIT_17s0000g01890.t01	Wine grape	nucleus	52.72	57.01
CDX83880	Canola	nucleus	41.42	54.4
KRH38975	Soybean	nucleus	52.3	52.74
KRH09502	Soybean	nucleus	50.63	51.71
PGSC0003DMT400079714	Potato	nucleus	51.05	50.0
CDX72988	Canola	nucleus	46.44	49.12
Bra031008.1-P	Field mustard	nucleus	50.63	48.99
CDX96475	Canola	nucleus	46.44	48.68
Bra015992.1-P	Field mustard	nucleus	46.44	48.68
CDX96742	Canola	nucleus	48.95	48.35
CDY21727	Canola	nucleus	50.63	48.21
AT1G17950.1	Thale cress	nucleus	50.21	48.19
CDX81853	Canola	nucleus	49.79	48.18
CDX82074	Canola	nucleus	46.86	48.07
Bra016575.1-P	Field mustard	nucleus	48.54	47.93
CDY58312	Canola	nucleus	46.03	47.01
Bra008096.1-P	Field mustard	nucleus	46.03	47.01
AT1G73410.1	Thale cress	nucleus	47.28	46.5
EES09660	Sorghum	nucleus	44.35	38.41
EES15780	Sorghum	nucleus	38.08	36.11
EES02759	Sorghum	nucleus	40.17	34.04
EES02758	Sorghum	nucleus	43.1	33.99
EES02760	Sorghum	nucleus	37.24	33.33
EES13945	Sorghum	nucleus	20.5	21.78
EER90085	Sorghum	nucleus	26.78	20.45
OQU75658	Sorghum	nucleus	24.27	20.35
EES04668	Sorghum	nucleus	27.62	20.18
EER98550	Sorghum	nucleus	27.62	18.03
EES18041	Sorghum	nucleus	24.69	16.53
OQU87862	Sorghum	nucleus	27.2	16.29
OQU80507	Sorghum	nucleus	44.77	15.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8059988	UniProt:C5WMY1	EnsemblPlants:EER93554	ProteinID:EER93554
ProteinID:EER93554.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF578	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3001G110900	SUPFAM:SSF46689	UniParc:UPI0001A82833	RefSeq:XP_002466556.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:8614915..8616973

Molecular Weight (calculated)

27142.5 Da

IEP (calculated)

7.573

GRAVY (calculated)

-0.890

Length

239 amino acids

Sequence
(BLAST)

001: MCTRGHWRPS EDEKLKELVA LYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFS EEEEELLLAS HRVHGNRWAV IARLFPGRTD NAVKNHWHVI
101: MARRCRERMR LSNRRGGGAA GAAVAGAGAV EDDNNPRNAK KPRPDASSMA SLLDKYRREF SVVPFAINHN SNQQDYCSTT NEADTNKSVE FYDFLQVNAN
201: SSDTKCGSSI EEQEENRDDQ AEGQVQFIDF LEVGASHRQ

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.