CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015614_P001	Maize	nucleus	85.32	91.78
HORVU6Hr1G035470.1	Barley	nucleus	77.98	86.15
TraesCS6D01G162900.1	Wheat	nucleus	77.68	85.52
TraesCS6A01G173800.1	Wheat	nucleus	77.37	84.9
TraesCS6B01G201700.1	Wheat	nucleus	75.54	84.3
Os02t0187700-00	Rice	nucleus	75.23	81.73
EER90085	Sorghum	nucleus	63.0	65.81
CDX83109	Canola	nucleus	24.46	49.38
CDY43567	Canola	nucleus	29.97	45.16
EER98550	Sorghum	nucleus	46.79	41.8
OQU75658	Sorghum	nucleus	32.42	37.19
EES13945	Sorghum	nucleus	22.32	32.44
EES18041	Sorghum	nucleus	34.86	31.93
EER93554	Sorghum	nucleus	20.18	27.62
EES02759	Sorghum	nucleus	23.55	27.3
EES15780	Sorghum	nucleus	20.49	26.59
EES02758	Sorghum	nucleus	24.46	26.4
EES02760	Sorghum	nucleus	20.49	25.09
EES09660	Sorghum	nucleus	20.8	24.64
OQU87862	Sorghum	nucleus	27.83	22.81
CDX83108	Canola	cytosol	2.14	17.95
OQU80507	Sorghum	nucleus	21.41	10.25

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8077654	UniProt:C5XX07	EnsemblPlants:EES04668	ProteinID:EES04668
ProteinID:EES04668.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF926	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3004G070900	SUPFAM:SSF46689	UniParc:UPI0001A856DB	RefSeq:XP_002451692.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:5726939..5728555

Molecular Weight (calculated)

34286.1 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.507

Length

327 amino acids

Sequence
(BLAST)

001: MGVESSECDR IKGPWSPEED EALRRLVERH GARNWTAIGR GIPGRSGKSC RLRWCNQLSP QVERRPFTPE EDAAILAAHA RLGNRWAAIA RLLPGRTDNA
101: VKNHWNSSLK RKLATATSSG GADIGDPEER PCKRASPAGP GSPTASDRSD LSHGCGGAAQ VFRPVPRAGG FDAISCTADV RPPPPPPAAA AEDYEDPLTS
201: LSLSLPGLDH QSASSGFHHD SARSHFQELS PSRSPSPQST PPPAALLSPP AAAAPSQSSS SSSSYPFSGE LVAAMQEMIR AEVRKYMSGA GLRAGCGPGA
301: VGEAGMPQLV EGVMRAAAER VGVVTRP

Best Arabidopsis Sequence Match ( AT5G67300.1 )
(BLAST)

001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE

Arabidopsis Description

MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.