CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040428_P001	Maize	nucleus	71.54	67.49
Bra039036.1-P	Field mustard	nucleus	28.09	38.86
EES02759	Sorghum	nucleus	40.07	37.94
EER93554	Sorghum	nucleus	33.33	37.24
EES02758	Sorghum	nucleus	41.2	36.3
AT5G39700.1	Thale cress	nucleus	24.72	34.74
EES15780	Sorghum	nucleus	31.46	33.33
EES09660	Sorghum	nucleus	33.33	32.25
Bra025652.1-P	Field mustard	nucleus	30.71	31.66
CDY44415	Canola	nucleus	30.71	31.42
CDY30264	Canola	nucleus	29.96	30.77
CDY67808	Canola	nucleus	17.6	29.56
Bra033078.1-P	Field mustard	nucleus	31.09	29.02
CDY20004	Canola	nucleus	30.71	28.57
CDY66025	Canola	nucleus	30.34	28.12
AT3G29020.2	Thale cress	nucleus	30.34	26.56
CDY66170	Canola	nucleus	30.71	26.11
CDX74436	Canola	nucleus	30.71	22.71
EER90085	Sorghum	nucleus	25.84	22.04
OQU75658	Sorghum	nucleus	22.47	21.05
EER98550	Sorghum	nucleus	28.09	20.49
EES04668	Sorghum	nucleus	25.09	20.49
EES13945	Sorghum	nucleus	15.73	18.67
EES18041	Sorghum	nucleus	23.6	17.65
OQU87862	Sorghum	nucleus	23.22	15.54
OQU80507	Sorghum	nucleus	35.58	13.91

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:C5XH79	EnsemblPlants:EES02760	ProteinID:EES02760	ProteinID:EES02760.1
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF941	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3003G129100
SUPFAM:SSF46689	UniParc:UPI0001A84F1C	RefSeq:XP_002457640.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:12045378..12046726

Molecular Weight (calculated)

29919.9 Da

IEP (calculated)

7.525

GRAVY (calculated)

-0.779

Length

267 amino acids

Sequence
(BLAST)

001: MDHLNPALPP TRALVPFQEG NKHVFIVEEA YDEHVEDHGT SNGHDGSSNQ GNRIMRRGHW CPSEDDKLKD LVARYGPKNW RRIAEKLEGR SGKSCRLRWI
101: NQLDPQLNRD AFSKEEEEQL LAARHAYGTK WSLIARLFPG RTDNAIKNHW HVMMARKSRA IQDIKISSSS CPSSSTQGSP HFMPIINIYH NYDNNMHPEL
201: NVPVEAAASH IYHANEFNNS SSTNTTHLSI GGGSDMAPHG RTPTATTDKG ADKFSPPFFD FLGVGNA

Best Arabidopsis Sequence Match ( AT1G26780.1 )
(BLAST)

001: MFITEKQVWM DEIVARRASS SWDFPFNDIN IHQHHHRHCN TSHEFEILKS PLGDVAVHEE ESNNNNPNFS NSESGKKETT DSGQSWSSSS SKPSVLGRGH
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGSL

Arabidopsis Description

MYB117MYB117 [Source:UniProtKB/TrEMBL;Acc:A0A178WCI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.