CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037994_P001	Maize	nucleus	57.7	55.83
TraesCS1D01G225200.1	Wheat	nucleus	42.02	49.34
TraesCS1B01G236900.1	Wheat	nucleus	40.9	48.18
Os05t0350900-01	Rice	nucleus	28.01	47.39
TraesCS1A01G223600.1	Wheat	nucleus	42.02	45.32
CDX83109	Canola	nucleus	20.45	45.06
HORVU1Hr1G060030.1	Barley	nucleus	41.46	44.31
OQU75658	Sorghum	nucleus	33.61	42.11
EER90085	Sorghum	nucleus	31.93	36.42
Zm00001d037999_P001	Maize	nucleus	29.13	35.74
EES04668	Sorghum	nucleus	31.93	34.86
EES13945	Sorghum	nucleus	21.57	34.22
Zm00001d037998_P001	Maize	nucleus	29.13	32.4
CDY43567	Canola	nucleus	19.61	32.26
EER98550	Sorghum	nucleus	31.93	31.15
EES02759	Sorghum	nucleus	19.61	24.82
EER93554	Sorghum	nucleus	16.53	24.69
EES15780	Sorghum	nucleus	17.09	24.21
EES02760	Sorghum	nucleus	17.65	23.6
EES02758	Sorghum	nucleus	19.61	23.1
OQU87862	Sorghum	nucleus	24.37	21.8
EES09660	Sorghum	nucleus	16.53	21.38
OQU80507	Sorghum	nucleus	18.49	9.66
CDX83108	Canola	cytosol	0.84	7.69

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8083751	UniProt:C5YWC0	EnsemblPlants:EES18041	ProteinID:EES18041
ProteinID:EES18041.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF907	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3009G103900	SUPFAM:SSF46689	UniParc:UPI0001A88C3B	RefSeq:XP_002439611.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:41931652..41933534

Molecular Weight (calculated)

37055.4 Da

IEP (calculated)

5.960

GRAVY (calculated)

-0.419

Length

357 amino acids

Sequence
(BLAST)

001: MVVPSSGAGG GVEGGGGGVS APAGSGSGGR VKGSWTPEED DLLRRAVTRH GPRNWTVISA EIPGRSGKSC RLRWCNQLSP GVERRAFTPE EDAVIVAAHA
101: QYGNKWATIA RMLHGRTDNS VKNHWNSTLR RQRRAAAANA NANANAATVG CALQLRPLAA AAVTSAPVPL CHLLDLKESA AAAASVPFHR LDPKEVVEDD
201: EDMDEEDDED GSSEDSVLMP PPKKRPCAGD QHPSSLAVKP EHAKPPPPLP APAPAPAEPL TSLTLSLPGN GVGVHDETPA PHSPAAAASV EAAVSMRAKL
301: EQDPWFVPVM RQMICEEVQR QMQGMDVSCS SLVAVPAAGR SSAGGGADNG GGANDHD

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.