Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01420 | Canola | nucleus | 67.74 | 55.89 |
| CDY12830 | Canola | nucleus | 64.98 | 55.73 |
| CDY23023 | Canola | nucleus | 61.29 | 45.86 |
| CDY02098 | Canola | nucleus | 60.83 | 45.05 |
| CDY57355 | Canola | nucleus | 56.68 | 44.24 |
| CDY30608 | Canola | nucleus | 52.53 | 43.02 |
| CDX83109 | Canola | nucleus | 28.57 | 38.27 |
| CDX72621 | Canola | nucleus | 46.08 | 37.74 |
| CDY22442 | Canola | nucleus | 47.0 | 37.09 |
| CDY29542 | Canola | nucleus | 45.16 | 36.98 |
| CDY44045 | Canola | nucleus | 47.93 | 36.49 |
| CDY38933 | Canola | nucleus | 48.39 | 35.96 |
| CDX89554 | Canola | nucleus | 47.47 | 35.15 |
| CDX75635 | Canola | nucleus | 47.93 | 34.78 |
| CDX69287 | Canola | nucleus | 47.93 | 33.99 |
| Zm00001d015614_P001 | Maize | nucleus | 44.7 | 31.91 |
| CDX68566 | Canola | nucleus | 46.08 | 31.85 |
| TraesCS6B01G201700.1 | Wheat | nucleus | 42.4 | 31.4 |
| HORVU6Hr1G035470.1 | Barley | nucleus | 42.4 | 31.08 |
| TraesCS6A01G173800.1 | Wheat | nucleus | 42.4 | 30.87 |
| TraesCS6D01G162900.1 | Wheat | nucleus | 41.94 | 30.64 |
| Os02t0187700-00 | Rice | nucleus | 42.4 | 30.56 |
| TraesCS7B01G444000.1 | Wheat | nucleus | 40.55 | 30.56 |
| EES04668 | Sorghum | nucleus | 45.16 | 29.97 |
| Zm00001d046632_P001 | Maize | nucleus | 41.94 | 29.93 |
| Os06t0637500-02 | Rice | cytosol, mitochondrion, nucleus | 42.86 | 29.9 |
| TraesCS7A01G526600.1 | Wheat | nucleus | 40.09 | 29.9 |
| TraesCS7B01G443800.1 | Wheat | nucleus | 40.09 | 29.49 |
| TraesCS7A01G526500.1 | Wheat | nucleus | 40.09 | 29.29 |
| TraesCS7D01G515100.1 | Wheat | nucleus | 39.63 | 29.25 |
| TraesCS7B01G443900.1 | Wheat | nucleus | 39.63 | 28.86 |
| TraesCS7D01G515000.1 | Wheat | nucleus | 39.63 | 28.86 |
| EER90085 | Sorghum | nucleus | 41.47 | 28.75 |
| HORVU7Hr1G116750.3 | Barley | nucleus | 37.33 | 27.55 |
| Zm00001d036768_P001 | Maize | nucleus | 38.25 | 26.95 |
| TraesCS7D01G514800.1 | Wheat | nucleus | 39.17 | 23.74 |
| HORVU7Hr1G116760.1 | Barley | mitochondrion | 38.25 | 23.31 |
| Os01t0977300-01 | Rice | nucleus | 25.35 | 22.0 |
| TraesCS1B01G236900.1 | Wheat | nucleus | 30.41 | 21.78 |
| TraesCS1D01G225200.1 | Wheat | nucleus | 29.95 | 21.38 |
| CDX83108 | Canola | cytosol | 3.69 | 20.51 |
| CDY21728 | Canola | nucleus | 14.75 | 20.38 |
| TraesCS4D01G297900.1 | Wheat | nucleus | 23.96 | 20.08 |
| CDY35992 | Canola | nucleus | 14.29 | 19.75 |
| TraesCS4B01G299000.1 | Wheat | nucleus | 23.5 | 19.69 |
| TraesCS1A01G223600.1 | Wheat | nucleus | 29.95 | 19.64 |
| EES18041 | Sorghum | nucleus | 32.26 | 19.61 |
| Zm00001d041935_P001 | Maize | nucleus | 23.5 | 19.32 |
| TraesCS4A01G047900.1 | Wheat | nucleus | 16.59 | 18.95 |
| HORVU1Hr1G060030.1 | Barley | nucleus | 29.03 | 18.86 |
| TraesCS4A01G006100.1 | Wheat | nucleus | 23.5 | 18.68 |
| OQU75658 | Sorghum | nucleus | 24.42 | 18.6 |
| CDX72988 | Canola | nucleus | 19.35 | 18.58 |
| Os08t0450900-00 | Rice | nucleus | 17.05 | 18.5 |
| CDX96475 | Canola | nucleus | 19.35 | 18.42 |
| CDX83880 | Canola | nucleus | 15.21 | 18.13 |
| HORVU4Hr1G077230.1 | Barley | nucleus | 22.12 | 17.2 |
| CDX82074 | Canola | nucleus | 18.43 | 17.17 |
| Zm00001d037994_P001 | Maize | nucleus | 29.03 | 17.07 |
| CDY58312 | Canola | nucleus | 17.97 | 16.67 |
| CDY71713 | Canola | nucleus | 17.51 | 16.52 |
| CDY67808 | Canola | nucleus | 11.98 | 16.35 |
| CDY07907 | Canola | nucleus | 24.88 | 16.27 |
| CDX73963 | Canola | nucleus | 24.88 | 16.12 |
| CDY20494 | Canola | nucleus | 27.19 | 16.03 |
| EES13945 | Sorghum | nucleus | 16.59 | 16.0 |
| CDX96742 | Canola | nucleus | 17.51 | 15.7 |
| CDX68977 | Canola | nucleus | 17.97 | 15.6 |
| CDY28302 | Canola | nucleus | 17.97 | 15.54 |
| Zm00001d037999_P001 | Maize | nucleus | 20.74 | 15.46 |
| CDX81853 | Canola | nucleus | 17.51 | 15.38 |
| CDX72208 | Canola | nucleus | 25.81 | 15.22 |
| CDX75353 | Canola | nucleus | 17.51 | 15.14 |
| CDY21727 | Canola | nucleus | 17.51 | 15.14 |
| CDY27271 | Canola | nucleus | 25.81 | 15.01 |
| CDY44415 | Canola | nucleus | 17.97 | 14.94 |
| CDX74825 | Canola | nucleus | 27.19 | 14.71 |
| CDX72405 | Canola | nucleus | 16.13 | 14.52 |
| CDY46114 | Canola | nucleus | 16.13 | 14.52 |
| Zm00001d037998_P001 | Maize | nucleus | 20.74 | 14.02 |
| CDY30264 | Canola | nucleus | 16.13 | 13.46 |
| CDY20004 | Canola | nucleus | 17.51 | 13.24 |
| CDY66025 | Canola | nucleus | 17.51 | 13.19 |
| CDY07345 | Canola | nucleus | 17.97 | 13.09 |
| CDY67868 | Canola | nucleus | 17.97 | 13.09 |
| CDY16884 | Canola | nucleus | 18.43 | 12.82 |
| CDX95921 | Canola | nucleus | 18.89 | 12.81 |
| CDX70776 | Canola | nucleus | 18.43 | 12.78 |
| CDX78761 | Canola | nucleus | 18.43 | 12.78 |
| CDX85443 | Canola | nucleus | 17.97 | 12.7 |
| CDY02687 | Canola | nucleus | 17.97 | 12.58 |
| CDY69058 | Canola | nucleus | 15.21 | 12.5 |
| CDY38460 | Canola | nucleus | 18.43 | 12.35 |
| CDY40941 | Canola | nucleus | 17.97 | 12.19 |
| Os05t0350900-01 | Rice | nucleus | 11.52 | 11.85 |
| CDY66170 | Canola | nucleus | 17.05 | 11.78 |
| CDY50737 | Canola | nucleus | 17.97 | 11.34 |
| CDY44993 | Canola | nucleus | 17.97 | 11.05 |
| CDY46444 | Canola | nucleus | 17.97 | 11.05 |
| CDX74436 | Canola | nucleus | 16.13 | 9.7 |
| CDY70773 | Canola | nucleus | 10.6 | 8.04 |
| CDY70901 | Canola | nucleus | 10.6 | 8.04 |
Protein Annotations
| EnsemblPlants:CDY43567 | EnsemblPlantsGene:GSBRNA2T00076869001 | Gene3D:1.10.10.60 | GO:A0A078I0F2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF940 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY43567 | ProteinID:CDY43567.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEAFFB | UniProt:A0A078I0F2 | MapMan:15.5.2.1 | : |
Description
BnaC02g16640DBnaC02g16640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0F2]
Coordinates
chrLK032561:+:155218..156368
Molecular Weight (calculated)
23119.2 Da
IEP (calculated)
7.419
GRAVY (calculated)
-0.464
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP SSRSVSDGGP PVANGLYMSP GSPTGSDVSD SSTIPVLPSV
101: GLFRPVPRAG GPLPTETSSS SGDPATSLSL SLPGADVSEE STNINTLSRR QNKNAESFLP FSGGFRGAIE EMGKSFAGDG GSEFMVMVQE MIKAEVRSYM
201: AEMQRDHSGI GGGVFVG
101: GLFRPVPRAG GPLPTETSSS SGDPATSLSL SLPGADVSEE STNINTLSRR QNKNAESFLP FSGGFRGAIE EMGKSFAGDG GSEFMVMVQE MIKAEVRSYM
201: AEMQRDHSGI GGGVFVG
001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
Arabidopsis Description
MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.