Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036048.1-P | Field mustard | nucleus | 92.09 | 96.24 |
| CDY30608 | Canola | nucleus | 90.29 | 94.72 |
| CDY23023 | Canola | nucleus | 83.09 | 79.66 |
| CDY02098 | Canola | nucleus | 82.01 | 77.82 |
| CDX83109 | Canola | nucleus | 45.32 | 77.78 |
| AT3G50060.1 | Thale cress | nucleus | 81.3 | 75.08 |
| CDY12830 | Canola | nucleus | 56.47 | 62.06 |
| CDY01420 | Canola | nucleus | 56.83 | 60.08 |
| CDX68566 | Canola | nucleus | 66.55 | 58.92 |
| CDY43567 | Canola | nucleus | 44.24 | 56.68 |
| CDX83108 | Canola | cytosol | 7.55 | 53.85 |
| CDX72621 | Canola | nucleus | 49.64 | 52.08 |
| CDY22442 | Canola | nucleus | 51.44 | 52.0 |
| CDY29542 | Canola | nucleus | 48.2 | 50.57 |
| CDY44045 | Canola | nucleus | 51.44 | 50.18 |
| KRH61351 | Soybean | nucleus | 46.4 | 49.81 |
| KRH15420 | Soybean | nucleus | 48.56 | 49.45 |
| CDY38933 | Canola | nucleus | 51.8 | 49.32 |
| KRH05621 | Soybean | nucleus | 47.48 | 49.25 |
| CDX75635 | Canola | nucleus | 52.88 | 49.16 |
| CDX89554 | Canola | nucleus | 51.44 | 48.81 |
| CDX69287 | Canola | nucleus | 52.88 | 48.04 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 46.04 | 47.58 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 46.04 | 44.14 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 45.32 | 43.75 |
| Zm00001d005300_P001 | Maize | nucleus | 43.88 | 42.81 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 42.81 | 42.2 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 43.53 | 42.01 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 45.32 | 41.72 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 39.21 | 40.98 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 44.24 | 40.59 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 43.17 | 40.4 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 42.81 | 40.2 |
| Os09t0106700-01 | Rice | nucleus | 46.04 | 40.13 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 46.76 | 38.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.21 | 38.52 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 46.04 | 38.1 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 46.4 | 37.61 |
| Zm00001d019712_P001 | Maize | nucleus | 46.4 | 37.39 |
| EER98550 | Sorghum | nucleus | 46.4 | 35.25 |
| CDY21728 | Canola | nucleus | 19.06 | 33.76 |
| CDY35992 | Canola | nucleus | 18.35 | 32.48 |
| HORVU5Hr1G049880.1 | Barley | plastid | 45.32 | 29.72 |
| CDX83880 | Canola | nucleus | 19.06 | 29.12 |
| CDY58312 | Canola | nucleus | 23.02 | 27.35 |
| CDX72988 | Canola | nucleus | 21.94 | 26.99 |
| CDX96475 | Canola | nucleus | 21.94 | 26.75 |
| CDX82074 | Canola | nucleus | 22.3 | 26.61 |
| CDY71713 | Canola | nucleus | 21.94 | 26.52 |
| CDX73963 | Canola | nucleus | 30.94 | 25.67 |
| CDY07907 | Canola | nucleus | 30.58 | 25.6 |
| CDY44415 | Canola | nucleus | 23.38 | 24.9 |
| CDX72405 | Canola | nucleus | 21.58 | 24.9 |
| CDY46114 | Canola | nucleus | 21.58 | 24.9 |
| CDX68977 | Canola | nucleus | 21.58 | 24.0 |
| CDY28302 | Canola | nucleus | 21.58 | 23.9 |
| CDX75353 | Canola | nucleus | 21.58 | 23.9 |
| CDX72208 | Canola | nucleus | 31.3 | 23.64 |
| CDY27271 | Canola | nucleus | 31.65 | 23.59 |
| CDX96742 | Canola | nucleus | 19.78 | 22.73 |
| CDY30264 | Canola | nucleus | 21.22 | 22.69 |
| CDX81853 | Canola | nucleus | 20.14 | 22.67 |
| CDY20494 | Canola | nucleus | 29.5 | 22.28 |
| CDY07345 | Canola | nucleus | 23.74 | 22.15 |
| CDY20004 | Canola | nucleus | 22.66 | 21.95 |
| CDY66025 | Canola | nucleus | 22.66 | 21.88 |
| CDY67868 | Canola | nucleus | 23.38 | 21.81 |
| CDY21727 | Canola | nucleus | 19.42 | 21.51 |
| CDY69058 | Canola | nucleus | 20.14 | 21.21 |
| CDX95921 | Canola | nucleus | 24.1 | 20.94 |
| CDY16884 | Canola | nucleus | 23.38 | 20.83 |
| CDY67808 | Canola | nucleus | 11.87 | 20.75 |
| CDX74825 | Canola | nucleus | 29.86 | 20.7 |
| CDY40941 | Canola | nucleus | 23.38 | 20.31 |
| CDY66170 | Canola | nucleus | 22.66 | 20.06 |
| CDY38460 | Canola | nucleus | 23.38 | 20.06 |
| CDY02687 | Canola | nucleus | 22.3 | 20.0 |
| CDX85443 | Canola | nucleus | 21.94 | 19.87 |
| CDY50737 | Canola | nucleus | 23.74 | 19.19 |
| CDX78761 | Canola | nucleus | 21.58 | 19.17 |
| CDX70776 | Canola | nucleus | 21.58 | 19.17 |
| CDY44993 | Canola | nucleus | 24.1 | 18.98 |
| CDY46444 | Canola | nucleus | 24.1 | 18.98 |
| CDY70901 | Canola | nucleus | 18.35 | 17.83 |
| CDY70773 | Canola | nucleus | 18.35 | 17.83 |
| CDX74436 | Canola | nucleus | 21.22 | 16.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078J247 | UniProt:A0A078J247 | EnsemblPlants:CDY57355 | ProteinID:CDY57355 |
| ProteinID:CDY57355.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00020887001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF691 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001E23D71 | SEG:seg |
Description
BnaC08g48630DBnaC08g48630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J247]
Coordinates
chrLK033568:+:14291..15277
Molecular Weight (calculated)
30902.2 Da
IEP (calculated)
6.535
GRAVY (calculated)
-0.754
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVKGPWS QEEDEQLRLM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV SARAKFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCLDG NPTTEEDQDR AKKRRSMSSE SVPPVDTGLY MSPESPTHVA SDSSAVPPQL FKPMPVSGGF TVPSPVEMTS SSEEDPATTL SLSLSLPVSQ
201: ESRNTGSSDN SLPFPKFESQ MKINVEERGE ARRAEFMTVV HEMVKAEVRS YMAEMQRNNG GGFVVGGFYD SGITPKVE
101: STLKRKCLDG NPTTEEDQDR AKKRRSMSSE SVPPVDTGLY MSPESPTHVA SDSSAVPPQL FKPMPVSGGF TVPSPVEMTS SSEEDPATTL SLSLSLPVSQ
201: ESRNTGSSDN SLPFPKFESQ MKINVEERGE ARRAEFMTVV HEMVKAEVRS YMAEMQRNNG GGFVVGGFYD SGITPKVE
001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
Arabidopsis Description
MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.